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mcrs1 microspherule protein 1 [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112145649, updated on 10-Jul-2024

Summary

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Gene symbol
mcrs1
Gene description
microspherule protein 1
See related
EnsemblRapid:ENSOMEG00005005289
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
14
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG5 NC_050516.1 (12449726..12456337)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020096081.1 (30545892..30552504, complement)

Linkage Group LG5 - NC_050516.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 1, tRNA methylguanosine Neighboring gene 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial Neighboring gene sulfite oxidase Neighboring gene matrix metallopeptidase 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of MLL1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of NSL complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microspherule protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050516.1 Reference ASM292280v2 Primary Assembly

    Range
    12449726..12456337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024271005.2 → XP_024126773.1  microspherule protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3CSZ0
    Related
    ENSOMEP00005010736.1, ENSOMET00005012079.1
    Conserved Domains (2) summary
    cd00060
    Location:355 → 445
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    pfam13325
    Location:133 → 330
    MCRS_N; N-terminal region of micro-spherule protein

  2. XM_024271006.2 → XP_024126774.1  microspherule protein 1 isoform X2

    Conserved Domains (2) summary
    cd00060
    Location:249 → 339
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
    pfam13325
    Location:27 → 224
    MCRS_N; N-terminal region of micro-spherule protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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