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lancl2 LanC lantibiotic synthetase component C-like 2 (bacterial) [ Oryzias melastigma (Indian medaka) ]

Gene ID: 112139044, updated on 10-Jul-2024

Summary

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Gene symbol
lancl2
Gene description
LanC lantibiotic synthetase component C-like 2 (bacterial)
See related
EnsemblRapid:ENSOMEG00005023789
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias melastigma
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
human zebrafish all
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Genomic context

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See lancl2 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
10
Annotation release Status Assembly LG Location
101 current ASM292280v2 (GCF_002922805.2) LG20 NC_050531.1 (25273848..25284924)
100 previous assembly Om_v0.7.RACA (GCF_002922805.1) Unplaced Scaffold NW_020098325.1 (1501903..1512991)

Linkage Group LG20 - NC_050531.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A0 Neighboring gene uncharacterized LOC112139045 Neighboring gene VOPP1 WW domain binding protein b Neighboring gene putative ferric-chelate reductase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tissue-specific transcriptome assemblies of the marine medaka Oryzias melastigma and comparative analysis with the freshwater medaka Oryzias latipes. Lai KP, et al. BMC Genomics, 2015 Feb 27. PMID 25765076, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lanC-like protein 2
Names
LanC like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias melastigma Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM292280v2 Primary Assembly

Genomic

  1. NC_050531.1 Reference ASM292280v2 Primary Assembly

    Range
    25273848..25284924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024261743.2 → XP_024117511.1  lanC-like protein 2

    UniProtKB/TrEMBL
    A0A3B3DBF2, A0A834FKL6
    Related
    ENSOMEP00005049584.1, ENSOMET00005058868.1
    Conserved Domains (1) summary
    cd04794
    Location:88 → 425
    euk_LANCL; Eukaryotic Lanthionine synthetase C-like protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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