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HP1BP3 heterochromatin protein 1 binding protein 3 [ Terrapene triunguis (Three-toed box turtle) ]

Gene ID: 112116081, updated on 19-May-2024

Summary

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Gene symbol
HP1BP3
Gene description
heterochromatin protein 1 binding protein 3
See related
Ensembl:ENSTMTG00000022692
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene triunguis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Orthologs
human mouse all
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Genomic context

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See HP1BP3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020665065.1 (22308534..22389973)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019962164.1 (615316..696788)

NW_020665065.1Genomic Context describing neighboring genes Neighboring gene endothelin converting enzyme 1 Neighboring gene eukaryotic translation initiation factor 4 gamma 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterochromatin protein 1-binding protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020665065.1 Reference T_m_triunguis-2.0

    Range
    22308534..22389973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024213384.2 → XP_024069152.1  heterochromatin protein 1-binding protein 3 isoform X5

    Conserved Domains (4) summary
    cd00073
    Location:116 → 206
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:303 → 372
    Linker_histone; linker histone H1 and H5 family
    cl29137
    Location:14 → 65
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cl30717
    Location:385 → 515
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

  2. XM_024213385.2 → XP_024069153.1  heterochromatin protein 1-binding protein 3 isoform X5

    Conserved Domains (4) summary
    cd00073
    Location:116 → 206
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:303 → 372
    Linker_histone; linker histone H1 and H5 family
    cl29137
    Location:14 → 65
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cl30717
    Location:385 → 515
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

  3. XM_024213380.2 → XP_024069148.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A674KFA1
    Related
    ENSTMTP00000031618.1, ENSTMTT00000032754.1
    Conserved Domains (4) summary
    cd00073
    Location:154 → 244
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:341 → 410
    Linker_histone; linker histone H1 and H5 family
    cl29137
    Location:52 → 103
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cl30717
    Location:423 → 553
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

  4. XM_024213383.2 → XP_024069151.1  heterochromatin protein 1-binding protein 3 isoform X3

    Conserved Domains (4) summary
    cd00073
    Location:148 → 238
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:335 → 404
    Linker_histone; linker histone H1 and H5 family
    NF000535
    Location:45 → 147
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cl30717
    Location:417 → 547
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

  5. XM_024213382.2 → XP_024069150.1  heterochromatin protein 1-binding protein 3 isoform X2

    Conserved Domains (4) summary
    cd00073
    Location:153 → 243
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:340 → 409
    Linker_histone; linker histone H1 and H5 family
    cl29137
    Location:51 → 102
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cl30717
    Location:422 → 552
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

  6. XM_026659930.1 → XP_026515715.1  heterochromatin protein 1-binding protein 3 isoform X4

    Conserved Domains (4) summary
    cd00073
    Location:125 → 215
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:312 → 381
    Linker_histone; linker histone H1 and H5 family
    cl29137
    Location:23 → 74
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cl30717
    Location:394 → 524
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

  7. XM_024213381.2 → XP_024069149.1  heterochromatin protein 1-binding protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A674KFA1
    Conserved Domains (4) summary
    cd00073
    Location:154 → 244
    H15; linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated ...
    pfam00538
    Location:341 → 410
    Linker_histone; linker histone H1 and H5 family
    cl29137
    Location:52 → 103
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cl30717
    Location:423 → 553
    InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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