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SF1 splicing factor 1 [ Terrapene triunguis (Three-toed box turtle) ]

Gene ID: 112105839, updated on 19-May-2024

Summary

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Gene symbol
SF1
Gene description
splicing factor 1
See related
Ensembl:ENSTMTG00000003098
Gene type
protein coding
RefSeq status
MODEL
Organism
Terrapene triunguis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Terrapene
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current T_m_triunguis-2.0 (GCF_002925995.2) Unplaced Scaffold NW_020664440.1 (31475079..31492262, complement)
100 previous assembly T_m_triunguis-1.0 (GCF_002925995.1) Unplaced Scaffold NW_019959742.1 (523347..543487)

NW_020664440.1Genomic Context describing neighboring genes Neighboring gene RAS guanyl releasing protein 2 Neighboring gene glycogen phosphorylase, muscle associated Neighboring gene mitogen-activated protein kinase kinase kinase kinase 2 Neighboring gene menin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Terrapene carolina triunguis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T_m_triunguis-2.0

Genomic

  1. NW_020664440.1 Reference T_m_triunguis-2.0

    Range
    31475079..31492262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024198814.3 → XP_024054582.1  splicing factor 1 isoform X3

    Conserved Domains (2) summary
    smart00343
    Location:449 → 464
    ZnF_C2HC; zinc finger
    COG5176
    Location:188 → 428
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  2. XM_024198812.3 → XP_024054580.1  splicing factor 1 isoform X2

    Conserved Domains (2) summary
    smart00343
    Location:449 → 464
    ZnF_C2HC; zinc finger
    COG5176
    Location:188 → 428
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  3. XM_024198816.3 → XP_024054584.1  splicing factor 1 isoform X5

    Conserved Domains (2) summary
    smart00343
    Location:449 → 464
    ZnF_C2HC; zinc finger
    COG5176
    Location:188 → 428
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  4. XM_024198811.3 → XP_024054579.1  splicing factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A674I7X3
    Related
    ENSTMTP00000004188.1, ENSTMTT00000004334.1
    Conserved Domains (2) summary
    smart00343
    Location:449 → 464
    ZnF_C2HC; zinc finger
    COG5176
    Location:188 → 428
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  5. XM_024198815.3 → XP_024054583.1  splicing factor 1 isoform X4

    Conserved Domains (2) summary
    smart00343
    Location:449 → 464
    ZnF_C2HC; zinc finger
    COG5176
    Location:188 → 428
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]

  6. XM_024198817.3 → XP_024054585.1  splicing factor 1 isoform X6

    Conserved Domains (2) summary
    smart00343
    Location:449 → 464
    ZnF_C2HC; zinc finger
    COG5176
    Location:188 → 428
    MSL5; Splicing factor (branch point binding protein) [RNA processing and modification]
Nucleotide Protein
Heading Accession and Version

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