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NLRC5 NLR family CARD domain containing 5 [ Cyanistes caeruleus (blue tit) ]

Gene ID: 111934495, updated on 3-Aug-2024

Summary

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Gene symbol
NLRC5
Gene description
NLR family CARD domain containing 5
See related
Ensembl:ENSCCEG00000008542
Gene type
protein coding
RefSeq status
MODEL
Organism
Cyanistes caeruleus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Paridae; Cyanistes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
50
Annotation release Status Assembly Chr Location
100 current cyaCae2 (GCF_002901205.1) 11 Unlocalized Scaffold NW_019776475.1 (6723472..6756239)

NW_019776475.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111934494 Neighboring gene homocysteine inducible ER protein with ubiquitin like domain 1 Neighboring gene cholesteryl ester transfer protein Neighboring gene copine 2 Neighboring gene proteasome activator subunit 3 interacting protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019776475 Chromosome 11 Unlocalized Scaffold Reference cyaCae2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of MHC class I biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of MHC class II biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein NLRC5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cyanistes caeruleus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference cyaCae2

Genomic

  1. NW_019776475.1 Reference cyaCae2

    Range
    6723472..6756239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023934590.1 → XP_023790358.1  LOW QUALITY PROTEIN: protein NLRC5

    Related
    ENSCCEP00000008234.1, ENSCCET00000013122.1
    Conserved Domains (4) summary
    sd00033
    Location:1578 → 1605
    LRR_RI; leucine-rich repeat [structural motif]
    sd00034
    Location:700 → 723
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam05729
    Location:238 → 406
    NACHT; NACHT domain
    cl26161
    Location:1500 → 1754
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
Nucleotide Protein
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