U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

gatad1 GATA zinc finger domain containing 1 [ Seriola lalandi dorsalis ]

Gene ID: 111659251, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
gatad1
Gene description
GATA zinc finger domain containing 1
See related
Ensembl:ENSSLDG00000012847
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola lalandi dorsalis (sub-species: dorsalis)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See gatad1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Sedor1 (GCF_002814215.1) Unplaced Scaffold NW_019525029.1 (2107858..2109755, complement)

NW_019525029.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 14B Neighboring gene protein naked cuticle homolog 2-like Neighboring gene uncharacterized LOC111659364 Neighboring gene chromatin accessibility complex subunit 1 Neighboring gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019525029 Unplaced Scaffold Reference Sedor1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
GATA zinc finger domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola lalandi dorsalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sedor1 Primary Assembly

Genomic

  1. NW_019525029.1 Reference Sedor1 Primary Assembly

    Range
    2107858..2109755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023412119.1 → XP_023267887.1  GATA zinc finger domain-containing protein 1

    UniProtKB/TrEMBL
    A0A3B4XKC7, A0A3B4XKD7
    Related
    ENSSLDP00000016190.1, ENSSLDT00000016786.1
    Conserved Domains (1) summary
    cl27715
    Location:9 → 33
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.