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gatad1 GATA zinc finger domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 678617, updated on 9-Sep-2025
Official Symbol
gatad1provided by ZNC
Official Full Name
GATA zinc finger domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050629-1
See related
Ensembl:ENSDARG00000027612 AllianceGenome:ZFIN:ZDB-GENE-050629-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7150682; zgc:136582
Summary
Predicted to enable sequence-specific DNA binding activity and zinc ion binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within regulation of DNA-templated transcription. Located in I band and nucleus. Is expressed in several structures, including brain; gut; heart; notochord; and pectoral fin. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2B. Orthologous to human GATAD1 (GATA zinc finger domain containing 1). [provided by Alliance of Genome Resources, Apr 2025]
Orthologs
human mouse all
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See gatad1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 19 NC_133194.1 (46815090..46830005)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 19 NC_007130.7 (43969390..43976439)

Chromosome 19 - NC_133194.1Genomic Context describing neighboring genes Neighboring gene lysophospholipase 2 Neighboring gene ankyrin repeat and IBR domain containing 1a Neighboring gene uncharacterized LOC100330546 Neighboring gene si:ch211-255a21.2 Neighboring gene NKD inhibitor of WNT signaling pathway 3

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Related articles in PubMed

  1. Modeling GATAD1-Associated Dilated Cardiomyopathy in Adult Zebrafish. Yang J, et al. J Cardiovasc Dev Dis, 2016 Mar. PMID 28955713, Free PMC Article
  2. Zebrafish Collagen Type I: Molecular and Biochemical Characterization of the Major Structural Protein in Bone and Skin. Gistelinck C, et al. Sci Rep, 2016 Feb 15. PMID 26876635, Free PMC Article
  3. Cardiac transcriptome and dilated cardiomyopathy genes in zebrafish. Shih YH, et al. Circ Cardiovasc Genet, 2015 Apr. PMID 25583992, Free PMC Article
  4. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Homology

Clone Names

  • MGC136582

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chromatin organization IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in I band IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  
Preferred Names
GATA zinc finger domain-containing protein 1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040364.1 → NP_001035454.1  GATA zinc finger domain-containing protein 1

    See identical proteins and their annotated locations for NP_001035454.1

    Status: PROVISIONAL

    Source sequence(s)
    BC115186
    Related
    ENSDARP00000051711.6, ENSDART00000051712.7

RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133194.1 Reference GRCz12tu Primary Assembly

    Range
    46815090..46830005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_073931108.1 → XP_073787209.1  GATA zinc finger domain-containing protein 1 isoform X2

  2. XM_073931110.1 → XP_073787211.1  GATA zinc finger domain-containing protein 1 isoform X3

  3. XM_073931107.1 → XP_073787208.1  GATA zinc finger domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q1L8G7, Q1RM13

  4. XM_073931109.1 → XP_073787210.1  GATA zinc finger domain-containing protein 1 isoform X3

  5. XM_073931111.1 → XP_073787212.1  GATA zinc finger domain-containing protein 1 isoform X3

  6. XM_073931113.1 → XP_073787214.1  GATA zinc finger domain-containing protein 1 isoform X3

  7. XM_073931112.1 → XP_073787213.1  GATA zinc finger domain-containing protein 1 isoform X3

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1L8G7.1 GenPept UniProtKB/Swiss-Prot:Q1L8G7

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