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atg13 ATG13 autophagy related 13 homolog (S. cerevisiae) [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111585690, updated on 18-Jun-2024

Summary

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Gene symbol
atg13
Gene description
ATG13 autophagy related 13 homolog (S. cerevisiae)
See related
Ensembl:ENSAOCG00000009046
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 24
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 24 NC_072789.1 (10157801..10167574, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019374400.1 (142029..151985)

Chromosome 24 - NC_072789.1Genomic Context describing neighboring genes Neighboring gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Bb Neighboring gene karyopherin (importin) beta 3 Neighboring gene harbinger transposase derived 1 Neighboring gene cAMP responsive element binding protein 3-like 1 Neighboring gene uncharacterized LOC111585696

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in piecemeal microautophagy of the nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Atg1/ULK1 kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 13
Names
autophagy related 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072789.1 Reference ASM2253959v1 Primary Assembly

    Range
    10157801..10167574 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023295262.3 → XP_023151030.1  autophagy-related protein 13 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1CBK6
    Related
    ENSAOCP00000023083.2, ENSAOCT00000006324.2
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 195
    ATG13; Autophagy-related protein 13

  2. XM_023295265.3 → XP_023151033.1  autophagy-related protein 13 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1C6P7, A0A3Q1CBH4
    Related
    ENSAOCP00000023102.2, ENSAOCT00000006281.2
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 195
    ATG13; Autophagy-related protein 13

  3. XM_023295264.3 → XP_023151032.1  autophagy-related protein 13 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1AVI3
    Related
    ENSAOCP00000005480.1, ENSAOCT00000006247.2
    Conserved Domains (1) summary
    pfam10033
    Location:19 → 195
    ATG13; Autophagy-related protein 13

  4. XM_035941524.2 → XP_035797417.1  autophagy-related protein 13 isoform X4

    Conserved Domains (1) summary
    pfam10033
    Location:17 → 113
    ATG13; Autophagy-related protein 13

RNA

  1. XR_008600825.1 RNA Sequence

    Related
    ENSAOCT00000059513.1
Nucleotide Protein
Heading Accession and Version

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