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cir1 corepressor interacting with RBPJ, CIR1 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111574592, updated on 18-Jun-2024

Summary

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Gene symbol
cir1
Gene description
corepressor interacting with RBPJ, CIR1
See related
Ensembl:ENSAOCG00000012561
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 11 NC_072776.1 (8934125..8941197)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019372820.1 (513363..520447, complement)

Chromosome 11 - NC_072776.1Genomic Context describing neighboring genes Neighboring gene acetylcholine receptor subunit alpha-like Neighboring gene G protein-coupled receptor 155a Neighboring gene secernin 3 Neighboring gene obg-like ATPase 1 Neighboring gene sp9 transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
corepressor interacting with RBPJ 1
Names
CBF1 (RBPJ) interacting corepressor 1
corepressor interacting with RBPJ, 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072776.1 Reference ASM2253959v1 Primary Assembly

    Range
    8934125..8941197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023279280.3 → XP_023135048.1  corepressor interacting with RBPJ 1

    UniProtKB/TrEMBL
    A0A3Q1B3W0
    Related
    ENSAOCP00000008535.1, ENSAOCT00000000913.2
    Conserved Domains (2) summary
    smart01083
    Location:13 → 49
    Cir_N; N-terminal domain of CBF1 interacting co-repressor CIR
    cl25887
    Location:329 → 428
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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