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cpeb1b cytoplasmic polyadenylation element binding protein 1b [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111564427, updated on 18-Sep-2024

Summary

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Gene symbol
cpeb1b
Gene description
cytoplasmic polyadenylation element binding protein 1b
See related
Ensembl:ENSAOCG00000000107
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Also known as
cpeb1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 1 NC_072766.1 (1593306..1622146, complement)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019376160.1 (57841..86619, complement)

Chromosome 1 - NC_072766.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase III subunit RPC1-like Neighboring gene DNA-directed RNA polymerase III subunit RPC1-like Neighboring gene RNA-binding protein, mRNA-processing factor 2a Neighboring gene proteasome subunit alpha type-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA regulatory element binding translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation factor activity, RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic polyadenylation element-binding protein 1
Names
cytoplasmic polyadenylation element binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072766.1 Reference ASM2253959v1 Primary Assembly

    Range
    1593306..1622146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035945315.2 → XP_035801208.1  cytoplasmic polyadenylation element-binding protein 1 isoform X2

    Related
    ENSAOCP00000042125.1, ENSAOCT00000082297.1
    Conserved Domains (4) summary
    pfam16366
    Location:506 → 561
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 314
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:316 → 418
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:429 → 512
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins

  2. XM_023263981.2 → XP_023119749.1  cytoplasmic polyadenylation element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1BYV1
    Related
    ENSAOCP00000020077.1, ENSAOCT00000013979.2
    Conserved Domains (4) summary
    cd12723
    Location:316 → 423
    RRM1_CPEB1; RNA recognition motif 1 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:434 → 519
    RRM2_CPEB1; RNA recognition motif 2 in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    pfam16366
    Location:511 → 566
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:1 → 314
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus

  3. XM_035945316.2 → XP_035801209.1  cytoplasmic polyadenylation element-binding protein 1 isoform X3

    Conserved Domains (4) summary
    pfam16366
    Location:460 → 515
    CEBP_ZZ; Cytoplasmic polyadenylation element-binding protein ZZ domain
    pfam16368
    Location:16 → 263
    CEBP1_N; Cytoplasmic polyadenylation element-binding protein 1 N-terminus
    cd12723
    Location:265 → 372
    RRM1_CPEB1; RNA recognition motif 1 (RRM1) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
    cd12725
    Location:383 → 466
    RRM2_CPEB1; RNA recognition motif 2 (RRM2) found in cytoplasmic polyadenylation element-binding protein 1 (CPEB-1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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