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spata17 spermatogenesis associated 17 [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111562692, updated on 15-Mar-2024

Summary

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Gene symbol
spata17
Gene description
spermatogenesis associated 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 1 NC_072766.1 (17668581..17745296)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019375997.1 (412276..494934, complement)

Chromosome 1 - NC_072766.1Genomic Context describing neighboring genes Neighboring gene Usher syndrome 2A (autosomal recessive, mild) Neighboring gene estrogen-related receptor gamma a Neighboring gene uncharacterized LOC118469681 Neighboring gene growth regulating estrogen receptor binding 1 Neighboring gene lipin 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in establishment of meiotic spindle localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spindle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072766.1 Reference ASM2253959v1 Primary Assembly

    Range
    17668581..17745296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023261361.3 → XP_023117129.1  spermatogenesis-associated protein 17

    UniProtKB/TrEMBL
    A0A3Q1AIF9, A0A3Q1ARV8
    Conserved Domains (1) summary
    cl27381
    Location:86 → 143
    Myosin_head; Myosin head (motor domain)

  2. XM_023261360.2 → XP_023117128.1  spermatogenesis-associated protein 17

    UniProtKB/TrEMBL
    A0A3Q1AIF9, A0A3Q1ARV8
    Conserved Domains (1) summary
    cl27381
    Location:86 → 143
    Myosin_head; Myosin head (motor domain)
Nucleotide Protein
Heading Accession and Version

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