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SPATA17 spermatogenesis associated 17 [ Homo sapiens (human) ]

Gene ID: 128153, updated on 23-Nov-2021

Summary

Official Symbol
SPATA17provided by HGNC
Official Full Name
spermatogenesis associated 17provided by HGNC
Primary source
HGNC:HGNC:25184
See related
Ensembl:ENSG00000162814 MIM:611032
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IQCH; MOT17; FAP305; MSRG11; CFAP305; MSRG-11
Expression
Restricted expression toward testis (RPKM 27.4) See more
Orthologs
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Genomic context

See SPATA17 in Genome Data Viewer
Location:
1q41
Exon count:
12
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (217631333..217871696)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (217804686..218045038)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372920 Neighboring gene G-patch domain containing 2 Neighboring gene SPATA17 antisense RNA 1 Neighboring gene uncharacterized LOC105372922 Neighboring gene long intergenic non-protein coding RNA 210 Neighboring gene ubiquitin B pseudogene 2 Neighboring gene VISTA enhancer hs1257

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calmodulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spermatogenesis-associated protein 17
Names
IQ motif containing H
spermatogenesis-related protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001375655.1NP_001362584.1  spermatogenesis-associated protein 17

    Status: VALIDATED

    Source sequence(s)
    AC097061, AL354659, AL445428
    Conserved Domains (1) summary
    smart00015
    Location:5576
    IQ; Calmodulin-binding motif
  2. NM_138796.4NP_620151.1  spermatogenesis-associated protein 17

    See identical proteins and their annotated locations for NP_620151.1

    Status: VALIDATED

    Source sequence(s)
    AL445428, AY963797, BX109478
    Consensus CDS
    CCDS1519.1
    UniProtKB/Swiss-Prot
    Q96L03
    Related
    ENSP00000355900.4, ENST00000366933.5
    Conserved Domains (1) summary
    smart00015
    Location:5576
    IQ; Calmodulin-binding motif

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    217631333..217871696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006711165.3XP_006711228.1  spermatogenesis-associated protein 17 isoform X2

    Conserved Domains (1) summary
    COG5022
    Location:55274
    COG5022; Myosin heavy chain [General function prediction only]
  2. XM_011509194.3XP_011507496.1  spermatogenesis-associated protein 17 isoform X3

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