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SPATA17 spermatogenesis associated 17 [ Homo sapiens (human) ]

Gene ID: 128153, updated on 26-Oct-2022

Summary

Official Symbol
SPATA17provided by HGNC
Official Full Name
spermatogenesis associated 17provided by HGNC
Primary source
HGNC:HGNC:25184
See related
Ensembl:ENSG00000162814 MIM:611032; AllianceGenome:HGNC:25184
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IQCH; MOT17; FAP305; MSRG11; CFAP305; MSRG-11
Summary
Predicted to enable calmodulin binding activity. Predicted to be located in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 27.4) See more
Orthologs
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Genomic context

See SPATA17 in Genome Data Viewer
Location:
1q41
Exon count:
12
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (217631344..217871696)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (216872358..217112494)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (217804686..218045038)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 1921 Neighboring gene G-patch domain containing 2 Neighboring gene Sharpr-MPRA regulatory region 7160 Neighboring gene SPATA17 antisense RNA 1 Neighboring gene ubiquitin B pseudogene 2 Neighboring gene uncharacterized LOC105372922 Neighboring gene long intergenic non-protein coding RNA 210 Neighboring gene VISTA enhancer hs1257

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calmodulin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spermatogenesis-associated protein 17
Names
IQ motif containing H
spermatogenesis-related protein 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001375655.1NP_001362584.1  spermatogenesis-associated protein 17

    Status: VALIDATED

    Source sequence(s)
    AC097061, AL354659, AL445428
    Consensus CDS
    CCDS1519.1
    UniProtKB/Swiss-Prot
    A5D6N2
    Conserved Domains (1) summary
    smart00015
    Location:5576
    IQ; Calmodulin-binding motif
  2. NM_138796.4NP_620151.1  spermatogenesis-associated protein 17

    See identical proteins and their annotated locations for NP_620151.1

    Status: VALIDATED

    Source sequence(s)
    AL445428, AY963797, BX109478
    Consensus CDS
    CCDS1519.1
    UniProtKB/Swiss-Prot
    A5D6N2, Q96L03
    Related
    ENSP00000355900.4, ENST00000366933.5
    Conserved Domains (1) summary
    smart00015
    Location:5576
    IQ; Calmodulin-binding motif

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    217631344..217871696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011509194.4XP_011507496.2  spermatogenesis-associated protein 17 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    216872358..217112494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)