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CDH1 cadherin 1 [ Piliocolobus tephrosceles (Ugandan red Colobus) ]

Gene ID: 111541390, updated on 15-Mar-2024

Summary

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Gene symbol
CDH1
Gene description
cadherin 1
See related
Ensembl:ENSPTEG00000011301
Gene type
protein coding
RefSeq status
MODEL
Organism
Piliocolobus tephrosceles
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
17
Annotation release Status Assembly Chr Location
102 current ASM277652v3 (GCF_002776525.3) 17 NC_045450.1 (53592144..53688582)
100 previous assembly ASM277652v1 (GCF_002776525.1) Unplaced Scaffold NW_019317143.1 (18591851..18688306)

Chromosome 17 - NC_045450.1Genomic Context describing neighboring genes Neighboring gene calponin-2-like Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene Neighboring gene cadherin 3 Neighboring gene ferritin light chain-like Neighboring gene transport and golgi organization 6 homolog Neighboring gene 60S ribosomal protein L26-like Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cadherin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Piliocolobus tephrosceles Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM277652v3

Genomic

  1. NC_045450.1 Reference ASM277652v3

    Range
    53592144..53688582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023210272.1 → XP_023066040.1  cadherin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C9LKN3
    Related
    ENSPTEP00000009977.1, ENSPTET00000015170.1
    Conserved Domains (5) summary
    cd00031
    Location:158 → 258
    CA_like; Cadherin repeat-like domain
    cd11304
    Location:492 → 591
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:738 → 879
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:27 → 116
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:598 → 686
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_023210273.1 → XP_023066041.1  cadherin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C9GUX4
    Related
    ENSPTEP00000009981.1, ENSPTET00000015174.1
    Conserved Domains (5) summary
    cd00031
    Location:158 → 258
    CA_like; Cadherin repeat-like domain
    cd11304
    Location:431 → 530
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:677 → 818
    Cadherin_C; Cadherin cytoplasmic region
    pfam08758
    Location:27 → 116
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:537 → 625
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  3. XM_023210274.1 → XP_023066042.1  cadherin-1 isoform X3

    Conserved Domains (3) summary
    cd11304
    Location:247 → 346
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam01049
    Location:493 → 634
    Cadherin_C; Cadherin cytoplasmic region
    cl09101
    Location:353 → 441
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
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