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ccdc177 coiled-coil domain containing 177 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111237161, updated on 12-Sep-2024

Summary

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Gene symbol
ccdc177
Gene description
coiled-coil domain containing 177
See related
Ensembl:ENSSDUG00000017917
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019175066.1 (106193..111599)

NW_019175066.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2, facilitated glucose transporter member 1-like Neighboring gene SPARC related modular calcium binding 1 Neighboring gene pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 Neighboring gene solute carrier family 39 member 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019175066 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
coiled-coil domain-containing protein 177

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019175066.1 Reference Sdu_1.0 Primary Assembly

    Range
    106193..111599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022766141.1 → XP_022621862.1  coiled-coil domain-containing protein 177

    UniProtKB/TrEMBL
    A0A3B4V3G8
    Related
    ENSSDUP00000024655.1, ENSSDUT00000025114.1
    Conserved Domains (3) summary
    pfam15558
    Location:474 → 846
    DUF4659; Domain of unknown function (DUF4659)
    cl25496
    Location:181 → 367
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl28033
    Location:1 → 350
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
Heading Accession and Version

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