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larp7 La ribonucleoprotein 7, transcriptional regulator [ Seriola dumerili (greater amberjack) ]

Gene ID: 111231624, updated on 15-Mar-2024

Summary

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Gene symbol
larp7
Gene description
La ribonucleoprotein 7, transcriptional regulator
See related
Ensembl:ENSSDUG00000007045
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174564.1 (501235..506572)

NW_019174564.1Genomic Context describing neighboring genes Neighboring gene ADAMTS like 1 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene collagen type XXV alpha 1 chain Neighboring gene stabilizer of axonemal microtubules 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174564 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
la-related protein 7
Names
La ribonucleoprotein domain family member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174564.1 Reference Sdu_1.0 Primary Assembly

    Range
    501235..506572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022758812.1 → XP_022614533.1  la-related protein 7

    UniProtKB/TrEMBL
    A0A3B4TU92, A0A3B4TV36
    Related
    ENSSDUP00000009600.1, ENSSDUT00000009786.1
    Conserved Domains (3) summary
    cd12290
    Location:126 → 203
    RRM1_LARP7; RNA recognition motif 1 in La-related protein 7 (LARP7) and similar proteins
    pfam08777
    Location:437 → 535
    RRM_3; RNA binding motif
    cl02755
    Location:30 → 111
    LAM; LA motif RNA-binding domain
Nucleotide Protein
Heading Accession and Version

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