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thnsl1 threonine synthase like 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111224350, updated on 15-Mar-2024

Summary

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Gene symbol
thnsl1
Gene description
threonine synthase like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174384.1 (1238072..1241136, complement)

NW_019174384.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 158a Neighboring gene patched domain containing 3 Neighboring gene phosphoribosyl transferase domain containing 1a Neighboring gene enkurin, TRPC channel interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174384 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
threonine synthase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174384.1 Reference Sdu_1.0 Primary Assembly

    Range
    1238072..1241136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022748805.1 → XP_022604526.1  threonine synthase-like 1

    UniProtKB/TrEMBL
    A0A3B4TZP5
    Conserved Domains (3) summary
    cd00464
    Location:39 → 193
    SK; Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis ...
    cl00342
    Location:212 → 687
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
    cl28332
    Location:5 → 67
    CmkB; Cytidylate kinase [Nucleotide transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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