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sarm1 sterile alpha and TIR motif containing 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111224065, updated on 15-Mar-2024

Summary

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Gene symbol
sarm1
Gene description
sterile alpha and TIR motif containing 1
See related
Ensembl:ENSSDUG00000002910
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174377.1 (3413312..3417920, complement)

NW_019174377.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 13 member 2-like Neighboring gene solute carrier family 46 member 1 Neighboring gene vitronectin a Neighboring gene scavenger receptor class F, member 1 Neighboring gene Rab interacting lysosomal protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174377 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterile alpha and TIR motif-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174377.1 Reference Sdu_1.0 Primary Assembly

    Range
    3413312..3417920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022748443.1 → XP_022604164.1  sterile alpha and TIR motif-containing protein 1

    UniProtKB/TrEMBL
    A0A3B4TD39
    Related
    ENSSDUP00000003867.1, ENSSDUT00000003950.1
    Conserved Domains (3) summary
    cd09501
    Location:407 → 475
    SAM_SARM1-like_repeat1; SAM domain ot SARM1-like proteins, repeat 1
    cd09502
    Location:476 → 543
    SAM_SARM1-like_repeat2; SAM domain of SARM1-like, repeat 2
    smart00255
    Location:556 → 693
    TIR; Toll - interleukin 1 - resistance
Nucleotide Protein
Heading Accession and Version

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