U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ubap2l ubiquitin associated protein 2-like [ Seriola dumerili (greater amberjack) ]

Gene ID: 111223184, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
ubap2l
Gene description
ubiquitin associated protein 2-like
See related
Ensembl:ENSSDUG00000017703
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ubap2l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174365.1 (9297672..9322582, complement)

NW_019174365.1Genomic Context describing neighboring genes Neighboring gene aquaporin 10b Neighboring gene HCLS1 associated protein X-1 Neighboring gene chromosome unknown C1orf43 homolog Neighboring gene tuftelin 1b

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019174365 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ubiquitin-associated protein 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174365.1 Reference Sdu_1.0 Primary Assembly

    Range
    9297672..9322582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022747233.1 → XP_022602954.1  ubiquitin-associated protein 2-like isoform X6

    UniProtKB/TrEMBL
    A0A3B4V159
    Conserved Domains (2) summary
    cd14277
    Location:52 → 89
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:544 → 571
    DUF3697; Ubiquitin-associated protein 2

  2. XM_022747231.1 → XP_022602952.1  ubiquitin-associated protein 2-like isoform X4

    UniProtKB/TrEMBL
    A0A3B4V0Y7
    Related
    ENSSDUP00000024386.1, ENSSDUT00000024844.1
    Conserved Domains (3) summary
    cd14277
    Location:52 → 89
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:544 → 571
    DUF3697; Ubiquitin-associated protein 2
    cl26464
    Location:469 → 759
    Atrophin-1; Atrophin-1 family

  3. XM_022747229.1 → XP_022602950.1  ubiquitin-associated protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A3B4V0Y7
    Conserved Domains (3) summary
    cd14277
    Location:52 → 89
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:559 → 586
    DUF3697; Ubiquitin-associated protein 2
    cl26464
    Location:484 → 764
    Atrophin-1; Atrophin-1 family

  4. XM_022747230.1 → XP_022602951.1  ubiquitin-associated protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A3B4V0Y7, A0A3B4V2M9
    Related
    ENSSDUP00000024350.1, ENSSDUT00000024806.1
    Conserved Domains (2) summary
    cd14277
    Location:52 → 89
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:559 → 586
    DUF3697; Ubiquitin-associated protein 2

  5. XM_022747232.1 → XP_022602953.1  ubiquitin-associated protein 2-like isoform X5

    UniProtKB/TrEMBL
    A0A3B4V159
    Related
    ENSSDUP00000024439.1, ENSSDUT00000024897.1
    Conserved Domains (3) summary
    cd14277
    Location:52 → 89
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:559 → 586
    DUF3697; Ubiquitin-associated protein 2
    cl26464
    Location:484 → 774
    Atrophin-1; Atrophin-1 family

  6. XM_022747228.1 → XP_022602949.1  ubiquitin-associated protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A3B4V0Y7
    Conserved Domains (3) summary
    cd14277
    Location:52 → 89
    UBA_UBP2_like; UBA domain found in ubiquitin-associated protein 2 (UBAP-2) like proteins
    pfam12478
    Location:559 → 586
    DUF3697; Ubiquitin-associated protein 2
    cl26464
    Location:484 → 774
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.