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atp5pb ATP synthase peripheral stalk-membrane subunit b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111219103, updated on 15-Mar-2024

Summary

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Gene symbol
atp5pb
Gene description
ATP synthase peripheral stalk-membrane subunit b
See related
Ensembl:ENSSDUG00000008317
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
atp5f1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174311.1 (4596815..4601982)

NW_019174311.1Genomic Context describing neighboring genes Neighboring gene emerin Neighboring gene deoxyribonuclease I-like 1-like Neighboring gene TRAF3-interacting JNK-activating modulator-like Neighboring gene EPS8 signaling adaptor L3b Neighboring gene glutathione S-transferase Mu 3-like Neighboring gene adenosine monophosphate deaminase 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174311 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase F(0) complex subunit B1, mitochondrial
Names
ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174311.1 Reference Sdu_1.0 Primary Assembly

    Range
    4596815..4601982
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022741695.1 → XP_022597416.1  ATP synthase F(0) complex subunit B1, mitochondrial

    UniProtKB/TrEMBL
    A0A3B4TYM7
    Related
    ENSSDUP00000011411.1, ENSSDUT00000011625.1
    Conserved Domains (1) summary
    pfam05405
    Location:121 → 282
    Mt_ATP-synt_B; Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
Nucleotide Protein
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