U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMG1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110587857, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SMG1
Gene description
SMG1 nonsense mediated mRNA decay associated PI3K related kinase
See related
EnsemblRapid:ENSNSCG00000004084
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
63
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 5 NC_058407.1 (151276321..151380679, complement)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734375.1 (14440634..14546117, complement)

Chromosome 5 - NC_058407.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S15a Neighboring gene ADP ribosylation factor like GTPase 6 interacting protein 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene C-type lectin domain containing 19A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
serine/threonine-protein kinase SMG1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058407.1 Reference ASM220157v2

    Range
    151276321..151380679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021698052.1 → XP_021553727.1  serine/threonine-protein kinase SMG1

    UniProtKB/TrEMBL
    A0A2Y9HQ56
    Related
    ENSNSCP00000004942.1, ENSNSCT00000005611.1
    Conserved Domains (3) summary
    cd05170
    Location:2119 → 2424
    PIKKc_SMG1; Catalytic domain of Suppressor of Morphogenetic effect on Genitalia-1
    pfam02260
    Location:3629 → 3658
    FATC; FATC domain
    pfam15785
    Location:630 → 1239
    SMG1; Serine/threonine-protein kinase smg-1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.