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RUNX2 RUNX family transcription factor 2 [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110581964, updated on 15-Mar-2024

Summary

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Gene symbol
RUNX2
Gene description
RUNX family transcription factor 2
See related
EnsemblRapid:ENSNSCG00000009018
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 8 NC_058410.1 (104869798..105082263, complement)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734341.1 (5311137..5523827)

Chromosome 8 - NC_058410.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4 Neighboring gene chloride intracellular channel 5 Neighboring gene SPT3 homolog, SAGA and STAGA complex component Neighboring gene elongation factor 1-alpha 1-like Neighboring gene cell division cycle 5 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
runt-related transcription factor 2
Names
runt related transcription factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058410.1 Reference ASM220157v2

    Range
    104869798..105082263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021691894.2 → XP_021547569.1  runt-related transcription factor 2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9HE63
    Related
    ENSNSCP00000011181.1
    Conserved Domains (3) summary
    pfam00853
    Location:110 → 231
    Runt; Runt domain
    pfam08504
    Location:431 → 522
    RunxI; Runx inhibition domain
    cl25496
    Location:267 → 482
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. XM_021691895.1 → XP_021547570.1  runt-related transcription factor 2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9HCY2
    Related
    ENSNSCP00000011195.1, ENSNSCT00000012713.1
    Conserved Domains (3) summary
    pfam00853
    Location:110 → 231
    Runt; Runt domain
    pfam08504
    Location:409 → 500
    RunxI; Runx inhibition domain
    cl25496
    Location:267 → 460
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. XM_021691897.2 → XP_021547572.1  runt-related transcription factor 2 isoform X5

    UniProtKB/TrEMBL
    A0A2Y9H7B2
    Conserved Domains (3) summary
    pfam00853
    Location:66 → 187
    Runt; Runt domain
    pfam08504
    Location:365 → 456
    RunxI; Runx inhibition domain
    cl25496
    Location:223 → 416
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. XM_021691898.2 → XP_021547573.1  runt-related transcription factor 2 isoform X6

    UniProtKB/TrEMBL
    A0A2Y9H7I7
    Conserved Domains (2) summary
    pfam00853
    Location:96 → 217
    Runt; Runt domain
    pfam08504
    Location:341 → 432
    RunxI; Runx inhibition domain

  5. XM_021691896.2 → XP_021547571.1  runt-related transcription factor 2 isoform X4

    UniProtKB/TrEMBL
    A0A2Y9H7B8
    Conserved Domains (3) summary
    pfam00853
    Location:96 → 217
    Runt; Runt domain
    pfam08504
    Location:395 → 486
    RunxI; Runx inhibition domain
    cl25496
    Location:253 → 446
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  6. XM_044917352.1 → XP_044773287.1  runt-related transcription factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A8M1MHH4
    Conserved Domains (1) summary
    pfam05109
    Location:253 → 468
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version

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