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YOD1 YOD1 deubiquitinase [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110574094, updated on 15-Mar-2024

Summary

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Gene symbol
YOD1
Gene description
YOD1 deubiquitinase
See related
EnsemblRapid:ENSNSCG00000020197
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 6 NC_058408.1 (32926398..32930425, complement)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734290.1 (5913567..5917594, complement)

Chromosome 6 - NC_058408.1Genomic Context describing neighboring genes Neighboring gene Fc alpha and mu receptor Neighboring gene chromosome 6 C1orf116 homolog Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 Neighboring gene complement component 4 binding protein beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase OTU1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058408.1 Reference ASM220157v2

    Range
    32926398..32930425 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021682740.1 → XP_021538415.1  ubiquitin thioesterase OTU1

    UniProtKB/TrEMBL
    A0A2Y9GKA5
    Related
    ENSNSCP00000025447.1, ENSNSCT00000028696.1
    Conserved Domains (2) summary
    COG5539
    Location:91 → 347
    COG5539; Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
    cl00155
    Location:46 → 89
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version

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