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Capn1 calpain 1 [ Meriones unguiculatus (Mongolian gerbil) ]

Gene ID: 110549350, updated on 15-Mar-2024

Summary

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Gene symbol
Capn1
Gene description
calpain 1
See related
EnsemblRapid:ENSMUGG00015027184
Gene type
protein coding
RefSeq status
MODEL
Organism
Meriones unguiculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_10 current Bangor_MerUng_6.1 (GCF_030254825.1) 1 NC_083349.1 (25018169..25040091, complement)
100 previous assembly MunDraft-v1.0 (GCF_002204375.1) Unplaced Scaffold NW_018657958.1 (525095..546388)

Chromosome 1 - NC_083349.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase alpha 2, accessory subunit Neighboring gene solute carrier family 22 member 20 Neighboring gene synoviolin 1 Neighboring gene mitochondrial ribosomal protein L49 Neighboring gene FAU ubiquitin like and ribosomal protein S30 fusion

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-1 catalytic subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030254825.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bangor_MerUng_6.1

Genomic

  1. NC_083349.1 Reference Bangor_MerUng_6.1

    Range
    25018169..25040091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021638456.2 → XP_021494131.1  calpain-1 catalytic subunit

    Related
    ENSMUGP00015039022.1, ENSMUGT00015049570.1
    Conserved Domains (3) summary
    pfam00648
    Location:56 → 352
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:373 → 516
    Calpain_III; Calpain large subunit, domain III
    cd16198
    Location:545 → 713
    EFh_PEF_CAPN1; Penta-EF hand, calcium binding motifs, found in mu-type calpain (CAPN1)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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