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POGZ pogo transposable element derived with ZNF domain [ Lonchura striata (white-rumped munia) ]

Gene ID: 110482669, updated on 14-Aug-2024

Summary

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Gene symbol
POGZ
Gene description
pogo transposable element derived with ZNF domain
Locus tag
RLOC_00003979
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
19
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 25 NC_042590.1 (1528590..1561162)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657457.1 (55525..88097, complement)

Chromosome 25 - NC_042590.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110484443 Neighboring gene selenium binding protein 1 Neighboring gene uncharacterized LOC110482670 Neighboring gene cingulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: pogo transposable element with ZNF domain
Names
Pogo transposable element with ZNF domain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042590.1 Reference lonStrDom2 Primary Assembly

    Range
    1528590..1561162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031506915.1 → XP_031362775.1  LOW QUALITY PROTEIN: pogo transposable element with ZNF domain

    UniProtKB/TrEMBL
    A0A218U7L3
    Conserved Domains (4) summary
    smart00674
    Location:934 → 996
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    sd00017
    Location:470 → 491
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00020
    Location:434 → 467
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl21549
    Location:1071 → 1188
    rve; Integrase core domain
Nucleotide Protein
Heading Accession and Version

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