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CD47 CD47 molecule [ Lonchura striata (white-rumped munia) ]

Gene ID: 110477031, updated on 14-Aug-2024

Summary

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Gene symbol
CD47
Gene description
CD47 molecule
Locus tag
RLOC_00013500
See related
Ensembl:ENSLSDG00000014093
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 1 NC_042565.1 (112094002..112113619)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657065.1 (333340..352957)

Chromosome 1 - NC_042565.1Genomic Context describing neighboring genes Neighboring gene HHLA2 member of B7 family Neighboring gene intraflagellar transport 57 Neighboring gene BBX high mobility group box domain containing Neighboring gene serine/arginine-rich splicing factor 4 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables thrombospondin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leukocyte surface antigen CD47
Names
Leukocyte surface antigen CD47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042565.1 Reference lonStrDom2 Primary Assembly

    Range
    112094002..112113619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021542410.1 → XP_021398085.1  leukocyte surface antigen CD47 isoform X1

    Conserved Domains (2) summary
    pfam04549
    Location:157 → 303
    CD47; CD47 transmembrane region
    cd16090
    Location:26 → 130
    IgV_CD47; Immunoglobulin variable domain (IgV) in CD47

  2. XM_021542412.1 → XP_021398087.1  leukocyte surface antigen CD47 isoform X2

    Conserved Domains (2) summary
    pfam04549
    Location:157 → 303
    CD47; CD47 transmembrane region
    cd16090
    Location:26 → 130
    IgV_CD47; Immunoglobulin variable domain (IgV) in CD47

  3. XM_021542414.1 → XP_021398089.1  leukocyte surface antigen CD47 isoform X3

    UniProtKB/TrEMBL
    A0A218UE47
    Related
    ENSLSDP00000019854.1, ENSLSDT00000022449.1
    Conserved Domains (2) summary
    cd16090
    Location:26 → 130
    IgV_CD47; Immunoglobulin variable domain (IgV) in CD47
    pfam04549
    Location:144 → 290
    CD47; CD47 transmembrane region
Nucleotide Protein
Heading Accession and Version

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