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ETV1 ETS variant transcription factor 1 [ Lonchura striata (white-rumped munia) ]

Gene ID: 110474704, updated on 14-Aug-2024

Summary

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Gene symbol
ETV1
Gene description
ETS variant transcription factor 1
Locus tag
RLOC_00008053
See related
Ensembl:ENSLSDG00000017466
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 2 NC_042567.1 (28528090..28592072, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018656948.1 (1692897..1756944)

Chromosome 2 - NC_042567.1Genomic Context describing neighboring genes Neighboring gene scinderin Neighboring gene ADP ribosylation factor like GTPase 4A Neighboring gene diacylglycerol kinase beta Neighboring gene uncharacterized LOC110474679

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ETS translocation variant 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042567.1 Reference lonStrDom2 Primary Assembly

    Range
    28528090..28592072 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021538325.2 → XP_021394000.1  ETS translocation variant 1 isoform X2

    Conserved Domains (2) summary
    smart00413
    Location:311 → 395
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:3 → 310
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  2. XM_021538324.2 → XP_021393999.1  ETS translocation variant 1 isoform X1

    UniProtKB/TrEMBL
    A0A218V7T9
    Related
    ENSLSDP00000024908.1
    Conserved Domains (2) summary
    smart00413
    Location:334 → 418
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:3 → 333
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  3. XM_021538327.2 → XP_021394002.1  ETS translocation variant 1 isoform X3

    Conserved Domains (2) summary
    smart00413
    Location:294 → 378
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:21 → 293
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  4. XM_021538326.2 → XP_021394001.1  ETS translocation variant 1 isoform X3

    Related
    ENSLSDP00000024909.1
    Conserved Domains (2) summary
    smart00413
    Location:294 → 378
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:21 → 293
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  5. XM_021538328.2 → XP_021394003.1  ETS translocation variant 1 isoform X4

    Conserved Domains (2) summary
    smart00413
    Location:265 → 349
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:10 → 264
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  6. XM_021538329.2 → XP_021394004.1  ETS translocation variant 1 isoform X5

    Conserved Domains (2) summary
    smart00413
    Location:203 → 287
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:3 → 202
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  7. XM_021538330.2 → XP_021394005.1  ETS translocation variant 1 isoform X5

    Conserved Domains (2) summary
    smart00413
    Location:203 → 287
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:3 → 202
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

  8. XM_021538331.2 → XP_021394006.1  ETS translocation variant 1 isoform X5

    Conserved Domains (2) summary
    smart00413
    Location:203 → 287
    ETS; erythroblast transformation specific domain
    pfam04621
    Location:3 → 202
    ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
Nucleotide Protein
Heading Accession and Version

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