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KDM5B lysine demethylase 5B [ Lonchura striata (white-rumped munia) ]

Gene ID: 110469157, updated on 24-Sep-2024

Summary

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Gene symbol
KDM5B
Gene description
lysine demethylase 5B
Locus tag
RLOC_00009339
See related
Ensembl:ENSLSDG00000012704
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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See KDM5B in Genome Data Viewer
Location:
chromosome: 26
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_09 current lonStrDom2 (GCF_005870125.1) 26 NC_042591.1 (4714540..4770362, complement)

Chromosome 26 - NC_042591.1Genomic Context describing neighboring genes Neighboring gene leucine zipper like post translational regulator 1 Neighboring gene importin 9 Neighboring gene tubulin alpha-8 chain Neighboring gene RAB interacting factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042591.1 Chromosome 26 Reference lonStrDom2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 5B
Names
Lysine-specific demethylase 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_005870125.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042591.1 Reference lonStrDom2 Primary Assembly

    Range
    4714540..4770362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021527665.2 → XP_021383340.1  lysine-specific demethylase 5B isoform X2

    Conserved Domains (9) summary
    smart00501
    Location:76 → 166
    BRIGHT; ARID (A/T-rich interaction domain) domain
    smart00545
    Location:9 → 50
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:460 → 576
    JmjC; JmjC domain, hydroxylase
    cd15603
    Location:285 → 330
    PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
    cd15607
    Location:1152 → 1195
    PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
    cd15687
    Location:1462 → 1511
    PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
    pfam02928
    Location:666 → 718
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:731 → 1060
    PLU-1; PLU-1-like protein
    cl26267
    Location:1088 → 1196
    ING; Inhibitor of growth proteins N-terminal histone-binding

  2. XM_021527664.1 → XP_021383339.1  lysine-specific demethylase 5B isoform X1

    UniProtKB/TrEMBL
    A0A218USC5
    Related
    ENSLSDP00000017778.1, ENSLSDT00000020164.1
    Conserved Domains (9) summary
    smart00501
    Location:76 → 166
    BRIGHT; ARID (A/T-rich interaction domain) domain
    smart00545
    Location:9 → 50
    JmjN; Small domain found in the jumonji family of transcription factors
    pfam02373
    Location:461 → 577
    JmjC; JmjC domain, hydroxylase
    cd15603
    Location:286 → 331
    PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
    cd15607
    Location:1153 → 1196
    PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
    cd15687
    Location:1463 → 1512
    PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
    pfam02928
    Location:667 → 719
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:732 → 1061
    PLU-1; PLU-1-like protein
    cl26267
    Location:1089 → 1197
    ING; Inhibitor of growth proteins N-terminal histone-binding
Nucleotide Protein
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