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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_050659.1 RefSeqGene
- Range
-
4938..89223
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001314042.1 → NP_001300971.1 lysine-specific demethylase 5B isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC098934, AC104463, AF087481, AI262935
- Consensus CDS
-
CCDS81417.1
- UniProtKB/Swiss-Prot
-
Q9UGL1
- Related
- ENSP00000356233.2, ENST00000367264.7
- Conserved Domains (8) summary
-
- smart00501
Location:98 → 188
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- smart00545
Location:31 → 72
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:522 → 638
- JmjC; JmjC domain, hydroxylase
- cd15603
Location:347 → 392
- PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
- cd15607
Location:1214 → 1257
- PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
- cd15687
Location:1522 → 1571
- PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
- pfam02928
Location:728 → 780
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:793 → 1122
- PLU-1; PLU-1-like protein
-
NM_001347591.1 → NP_001334520.1 lysine-specific demethylase 5B isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks two exons in the 5' coding region compared to variant 1. It encodes isoform 3, which is shorter than isoform 1.
- Source sequence(s)
-
AC098934, AC104463
- Related
- ENSP00000497671.1, ENST00000650569.1
-
NM_006618.5 → NP_006609.3 lysine-specific demethylase 5B isoform 2
See identical proteins and their annotated locations for NP_006609.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an exon in the 5' coding region compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AC098934, AC104463
- Consensus CDS
-
CCDS30974.1
- UniProtKB/Swiss-Prot
-
Q9UGL1
- Related
- ENSP00000356234.3, ENST00000367265.9
- Conserved Domains (8) summary
-
- smart00501
Location:98 → 188
- BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain
- smart00545
Location:31 → 72
- JmjN; Small domain found in the jumonji family of transcription factors
- pfam02373
Location:486 → 602
- JmjC; JmjC domain, hydroxylase
- cd15603
Location:311 → 356
- PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
- cd15607
Location:1178 → 1221
- PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
- cd15687
Location:1486 → 1535
- PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
- pfam02928
Location:692 → 744
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:757 → 1086
- PLU-1; PLU-1-like protein
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p13 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p13 Primary Assembly
- Range
-
202724495..202809470 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011509091.2 → XP_011507393.1 lysine-specific demethylase 5B isoform X1
See identical proteins and their annotated locations for XP_011507393.1
- Related
-
ENST00000649542.1
- Conserved Domains (6) summary
-
- pfam02373
Location:364 → 480
- JmjC; JmjC domain, hydroxylase
- cd15603
Location:189 → 234
- PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
- cd15607
Location:1056 → 1099
- PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
- cd15687
Location:1364 → 1413
- PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
- pfam02928
Location:570 → 622
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:635 → 964
- PLU-1; PLU-1-like protein
-
XM_011509090.3 → XP_011507392.1 lysine-specific demethylase 5B isoform X1
See identical proteins and their annotated locations for XP_011507392.1
- Conserved Domains (6) summary
-
- pfam02373
Location:364 → 480
- JmjC; JmjC domain, hydroxylase
- cd15603
Location:189 → 234
- PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
- cd15607
Location:1056 → 1099
- PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
- cd15687
Location:1364 → 1413
- PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
- pfam02928
Location:570 → 622
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:635 → 964
- PLU-1; PLU-1-like protein
-
XM_011509092.2 → XP_011507394.1 lysine-specific demethylase 5B isoform X2
- Related
- ENSP00000497288.1, ENST00000649770.1
- Conserved Domains (6) summary
-
- pfam02373
Location:328 → 444
- JmjC; JmjC domain, hydroxylase
- cd15603
Location:153 → 198
- PHD1_KDM5B; PHD finger 1 found in lysine-specific demethylase 5B (KDM5B)
- cd15607
Location:1020 → 1063
- PHD2_KDM5B; PHD finger 2 found in lysine-specific demethylase 5B (KDM5B)
- cd15687
Location:1328 → 1377
- PHD3_KDM5B; PHD finger 3 found in lysine-specific demethylase 5B (KDM5B)
- pfam02928
Location:534 → 586
- zf-C5HC2; C5HC2 zinc finger
- pfam08429
Location:599 → 928
- PLU-1; PLU-1-like protein