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Cadm1 cell adhesion molecule 1 [ Mus pahari (shrew mouse) ]

Gene ID: 110328543, updated on 15-Mar-2024

Summary

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Gene symbol
Cadm1
Gene description
cell adhesion molecule 1
See related
Ensembl:MGP_PahariEiJ_G0015032
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 10 NC_034599.1 (42666297..42991618)

Chromosome 10 - NC_034599.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene aminoacyl tRNA synthase complex-interacting multifunctional protein 1 pseudogene Neighboring gene 60S ribosomal protein L29 pseudogene Neighboring gene NXPE family member 4-like Neighboring gene small nucleolar RNA SNORA48

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034599.1 Chromosome 10 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in susceptibility to natural killer cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034599.1 Reference PAHARI_EIJ_v1.1

    Range
    42666297..42991618
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021207957.2 → XP_021063616.1  cell adhesion molecule 1 isoform X1

    Related
    MGP_PahariEiJ_P0023364, MGP_PahariEiJ_T0023364.1
    Conserved Domains (4) summary
    smart00294
    Location:428 → 446
    4.1m; putative band 4.1 homologues' binding motif
    cd05881
    Location:49 → 143
    Ig1_Necl-2; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2
    cd05883
    Location:164 → 245
    Ig2_Necl-2; Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))
    smart00409
    Location:255 → 333
    IG; Immunoglobulin

  2. XM_021207961.1 → XP_021063620.1  cell adhesion molecule 1 isoform X5

    Related
    MGP_PahariEiJ_P0023363, MGP_PahariEiJ_T0023363.1
    Conserved Domains (4) summary
    smart00294
    Location:381 → 399
    4.1m; putative band 4.1 homologues' binding motif
    cd05881
    Location:49 → 143
    Ig1_Necl-2; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2
    cd05883
    Location:164 → 245
    Ig2_Necl-2; Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))
    smart00410
    Location:255 → 333
    IG_like; Immunoglobulin like

  3. XM_021207962.2 → XP_021063621.1  cell adhesion molecule 1 isoform X6

    Related
    MGP_PahariEiJ_P0023371, MGP_PahariEiJ_T0023371.1
    Conserved Domains (4) summary
    smart00294
    Location:370 → 388
    4.1m; putative band 4.1 homologues' binding motif
    cd05881
    Location:49 → 143
    Ig1_Necl-2; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2
    cd05883
    Location:164 → 245
    Ig2_Necl-2; Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))
    smart00410
    Location:255 → 333
    IG_like; Immunoglobulin like

  4. XM_021207959.1 → XP_021063618.1  cell adhesion molecule 1 isoform X3

    Related
    MGP_PahariEiJ_P0023367, MGP_PahariEiJ_T0023367.1
    Conserved Domains (4) summary
    smart00294
    Location:399 → 417
    4.1m; putative band 4.1 homologues' binding motif
    cd05881
    Location:49 → 143
    Ig1_Necl-2; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2
    cd05883
    Location:164 → 245
    Ig2_Necl-2; Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))
    smart00410
    Location:255 → 333
    IG_like; Immunoglobulin like

  5. XM_021207958.2 → XP_021063617.1  cell adhesion molecule 1 isoform X2

    Related
    MGP_PahariEiJ_P0023366, MGP_PahariEiJ_T0023366.1
    Conserved Domains (4) summary
    smart00294
    Location:410 → 428
    4.1m; putative band 4.1 homologues' binding motif
    cd05881
    Location:49 → 143
    Ig1_Necl-2; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2
    cd05883
    Location:164 → 245
    Ig2_Necl-2; Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))
    smart00410
    Location:255 → 333
    IG_like; Immunoglobulin like

  6. XM_021207960.2 → XP_021063619.1  cell adhesion molecule 1 isoform X4

    Conserved Domains (4) summary
    smart00294
    Location:399 → 417
    4.1m; putative band 4.1 homologues' binding motif
    cd05881
    Location:49 → 143
    Ig1_Necl-2; First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2
    cd05883
    Location:164 → 245
    Ig2_Necl-2; Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))
    smart00410
    Location:255 → 333
    IG_like; Immunoglobulin like
Nucleotide Protein
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