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Fat3 FAT atypical cadherin 3 [ Mus pahari (shrew mouse) ]

Gene ID: 110327165, updated on 15-Mar-2024

Summary

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Gene symbol
Fat3
Gene description
FAT atypical cadherin 3
See related
Ensembl:MGP_PahariEiJ_G0014678
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
31
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 10 NC_034599.1 (11311573..11915132, complement)

Chromosome 10 - NC_034599.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 36 member 4 Neighboring gene melatonin receptor 1B Neighboring gene iron-sulfur cluster assembly enzyme ISCU, mitochondrial pseudogene Neighboring gene elongation factor 1-alpha 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034599.1 Chromosome 10 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034599.1 Reference PAHARI_EIJ_v1.1

    Range
    11311573..11915132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021205908.2 → XP_021061567.2  protocadherin Fat 3 isoform X5

    Conserved Domains (4) summary
    cd11304
    Location:1049 → 1144
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:286 → 364
    CA; Cadherin repeats
    cd00054
    Location:4098 → 4133
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3865 → 3991
    Laminin_G_2; Laminin G domain

  2. XM_029542742.1 → XP_029398602.1  protocadherin Fat 3 isoform X4

    Conserved Domains (4) summary
    cd11304
    Location:1049 → 1144
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:286 → 364
    CA; Cadherin repeats
    cd00054
    Location:4098 → 4133
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3865 → 3991
    Laminin_G_2; Laminin G domain

  3. XM_029542740.1 → XP_029398600.1  protocadherin Fat 3 isoform X2

    Related
    MGP_PahariEiJ_P0022466, MGP_PahariEiJ_T0022466.1
    Conserved Domains (4) summary
    cd11304
    Location:1049 → 1144
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:286 → 364
    CA; Cadherin repeats
    cd00054
    Location:4121 → 4156
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3888 → 4014
    Laminin_G_2; Laminin G domain

  4. XM_029542741.1 → XP_029398601.1  protocadherin Fat 3 isoform X3

    Conserved Domains (4) summary
    cd11304
    Location:1049 → 1144
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:1436 → 1495
    CA; Cadherin repeats
    cd00054
    Location:4135 → 4170
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3902 → 4028
    Laminin_G_2; Laminin G domain

  5. XM_029542738.1 → XP_029398598.1  protocadherin Fat 3 isoform X1

    Conserved Domains (4) summary
    cd11304
    Location:1049 → 1144
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:1436 → 1495
    CA; Cadherin repeats
    cd00054
    Location:4135 → 4170
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3902 → 4028
    Laminin_G_2; Laminin G domain

  6. XM_029542739.1 → XP_029398599.1  protocadherin Fat 3 isoform X1

    Conserved Domains (4) summary
    cd11304
    Location:1049 → 1144
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:1436 → 1495
    CA; Cadherin repeats
    cd00054
    Location:4135 → 4170
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam02210
    Location:3902 → 4028
    Laminin_G_2; Laminin G domain

  7. XM_029542743.1 → XP_029398603.1  protocadherin Fat 3 isoform X6

    Conserved Domains (3) summary
    cd11304
    Location:1049 → 1144
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:1436 → 1495
    CA; Cadherin repeats
    pfam02210
    Location:3902 → 4028
    Laminin_G_2; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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