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Gsdmd gasdermin D [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110310447, updated on 19-Jun-2024

Summary

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Gene symbol
Gsdmd
Gene description
gasdermin D
See related
Ensembl:MGP_CAROLIEiJ_G0019898
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 15 NC_034584.1 (69817064..69822038)

Chromosome 15 - NC_034584.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA17 Neighboring gene zinc finger CCCH-type containing 3 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene maestro heat like repeat family member 6 Neighboring gene nicotinate phosphoribosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034584.1 Chromosome 15 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylserine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyroptotic inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NLRP3 inflammasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gasdermin-D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034584.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    69817064..69822038
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021183424.2 → XP_021039083.1  gasdermin-D isoform X1

    UniProtKB/TrEMBL
    A0A6P5R5W6
    Related
    MGP_CAROLIEiJ_P0038531, MGP_CAROLIEiJ_T0038531.1
    Conserved Domains (2) summary
    pfam04598
    Location:4 → 243
    Gasdermin; Gasdermin family
    pfam17708
    Location:286 → 458
    Gasdermin_C; Gasdermin PUB domain

  2. XM_021183425.2 → XP_021039084.1  gasdermin-D isoform X1

    UniProtKB/TrEMBL
    A0A6P5R5W6
    Conserved Domains (2) summary
    pfam04598
    Location:4 → 243
    Gasdermin; Gasdermin family
    pfam17708
    Location:286 → 458
    Gasdermin_C; Gasdermin PUB domain

  3. XM_029469389.1 → XP_029325249.1  gasdermin-D isoform X2

    UniProtKB/TrEMBL
    A0A6P7QEY6
Nucleotide Protein
Heading Accession and Version

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