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Tmlhe trimethyllysine hydroxylase, epsilon [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110287594, updated on 15-Mar-2024

Summary

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Gene symbol
Tmlhe
Gene description
trimethyllysine hydroxylase, epsilon
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
8
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) X Unlocalized Scaffold NW_018388438.1 (206833..325182)

NW_018388438.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene polyadenylate-binding protein 4 pseudogene Neighboring gene RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 pseudogene Neighboring gene diphosphomevalonate decarboxylase pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018388438 Chromosome X Unlocalized Scaffold Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables trimethyllysine dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trimethyllysine dioxygenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NW_018388438.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    206833..325182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021154170.1 → XP_021009829.1  trimethyllysine dioxygenase, mitochondrial

    UniProtKB/TrEMBL
    A0A6P5P4Q2
    Conserved Domains (1) summary
    TIGR02410
    Location:70 → 419
    carnitine_TMLD; trimethyllysine dioxygenase
Nucleotide Protein
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