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CIRBP cold inducible RNA binding protein [ Phascolarctos cinereus (koala) ]

Gene ID: 110223401, updated on 15-Mar-2024

Summary

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Gene symbol
CIRBP
Gene description
cold inducible RNA binding protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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See CIRBP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344085.1 (831330..838884)

NW_018344085.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F1 subunit delta Neighboring gene midnolin Neighboring gene family with sequence similarity 174 member C Neighboring gene ephrin A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344085 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cold-inducible RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344085.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    831330..838884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021008901.1 → XP_020864560.1  cold-inducible RNA-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A6P5M1M4
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif (RRM) found in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  2. XM_021008902.1 → XP_020864561.1  cold-inducible RNA-binding protein isoform X6

    UniProtKB/TrEMBL
    A0A6P5M8Q0
    Conserved Domains (2) summary
    TIGR01648
    Location:8 → 166
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif (RRM) found in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  3. XM_021008896.1 → XP_020864555.1  cold-inducible RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A6P5M1L9
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  4. XM_021008898.1 → XP_020864557.1  cold-inducible RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A6P5M1H2
    Conserved Domains (1) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif (RRM) found in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins

  5. XM_021008897.1 → XP_020864556.1  cold-inducible RNA-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A6P5M8P6
    Conserved Domains (2) summary
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins
    cl25617
    Location:8 → 177
    LSM_int_assoc; LSM-interacting associated unstructured

  6. XM_021008899.1 → XP_020864558.1  cold-inducible RNA-binding protein isoform X4

    UniProtKB/TrEMBL
    A0A6P5M449
    Conserved Domains (2) summary
    TIGR01648
    Location:8 → 171
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd12449
    Location:6 → 85
    RRM_CIRBP_RBM3; RNA recognition motif (RRM) found in cold inducible RNA binding protein (CIRBP), RNA binding motif protein 3 (RBM3) and similar proteins
Nucleotide Protein
Heading Accession and Version

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