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SRRM1 serine and arginine repetitive matrix 1 [ Phascolarctos cinereus (koala) ]

Gene ID: 110206082, updated on 15-Mar-2024

Summary

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Gene symbol
SRRM1
Gene description
serine and arginine repetitive matrix 1
See related
Ensembl:ENSPCIG00000009214
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018343966.1 (3402956..3439567)

NW_018343966.1Genomic Context describing neighboring genes Neighboring gene RCAN family member 3 Neighboring gene non-compact myelin associated protein Neighboring gene chloride intracellular channel 4 Neighboring gene RUNX family transcription factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018343966 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018343966.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    3402956..3439567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020983121.1 → XP_020838780.1  serine/arginine repetitive matrix protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A6P5K133
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:614 → 815
    Atrophin-1; Atrophin-1 family

  2. XM_020983117.1 → XP_020838776.1  serine/arginine repetitive matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5K1G0
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:593 → 886
    Atrophin-1; Atrophin-1 family

  3. XM_020983118.1 → XP_020838777.1  serine/arginine repetitive matrix protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5K1E6
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:621 → 822
    Atrophin-1; Atrophin-1 family

  4. XM_020983119.1 → XP_020838778.1  serine/arginine repetitive matrix protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A6P5K0P1
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:592 → 885
    Atrophin-1; Atrophin-1 family

  5. XM_020983120.1 → XP_020838779.1  serine/arginine repetitive matrix protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A6P5K0W8
    Related
    ENSPCIP00000011494.2, ENSPCIT00000014300.2
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:620 → 822
    Atrophin-1; Atrophin-1 family

  6. XM_020983122.1 → XP_020838781.1  serine/arginine repetitive matrix protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A6P5K1G4
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:608 → 810
    Atrophin-1; Atrophin-1 family

  7. XM_020983123.1 → XP_020838782.1  serine/arginine repetitive matrix protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A6P5K1F2
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:607 → 809
    Atrophin-1; Atrophin-1 family

  8. XM_020983124.1 → XP_020838783.1  serine/arginine repetitive matrix protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A6P5K0P5
    Related
    ENSPCIP00000011495.2, ENSPCIT00000014301.2
    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:605 → 807
    Atrophin-1; Atrophin-1 family

  9. XM_020983125.1 → XP_020838784.1  serine/arginine repetitive matrix protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A6P5K0X1
    Conserved Domains (2) summary
    pfam01480
    Location:7 → 44
    PWI; PWI domain
    cl26464
    Location:522 → 815
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
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