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THBS2 thrombospondin 2 [ Phascolarctos cinereus (koala) ]

Gene ID: 110197976, updated on 15-Mar-2024

Summary

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Gene symbol
THBS2
Gene description
thrombospondin 2
See related
Ensembl:ENSPCIG00000012907
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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See THBS2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344173.1 (3625754..3675357)

NW_018344173.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 27 Neighboring gene 40S ribosomal protein S11-like Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene protein DBF4 homolog A pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344173 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: thrombospondin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344173.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    3625754..3675357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020972068.1 → XP_020827727.1  LOW QUALITY PROTEIN: thrombospondin-2

    UniProtKB/TrEMBL
    A0A6P5J027
    Related
    ENSPCIP00000016793.2, ENSPCIT00000020737.2
    Conserved Domains (10) summary
    smart00209
    Location:494 → 546
    TSP1; Thrombospondin type 1 repeats
    sd00001
    Location:844 → 881
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:786 → 820
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:690 → 725
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam00093
    Location:317 → 371
    VWC; von Willebrand factor type C domain
    pfam00090
    Location:382 → 427
    TSP_1; Thrombospondin type 1 domain
    pfam02412
    Location:844 → 881
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:971 → 1168
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:649 → 688
    EGF_3; EGF domain
    cl22861
    Location:33 → 221
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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