U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

eri1 exoribonuclease 1 [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110161845, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
eri1
Gene description
exoribonuclease 1
Locus tag
NL108_000687
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See eri1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571133.1 (20376286..20378665)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018355106.1 (8694042..8695980)

NW_026571133.1Genomic Context describing neighboring genes Neighboring gene NADH:ubiquinone oxidoreductase subunit A12 Neighboring gene transmembrane and coiled-coil domain family 3 Neighboring gene laminin, beta 1b Neighboring gene single-stranded DNA binding protein 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
3'-5' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571133.1 Reference ASM2622593v1 Primary Assembly

    Range
    20376286..20378665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020926683.2 → XP_020782342.1  3'-5' exoribonuclease 1

    Conserved Domains (2) summary
    cd06133
    Location:120 → 300
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
    smart00513
    Location:64 → 98
    SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.