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HDAC9 histone deacetylase 9 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110142320, updated on 15-Mar-2024

Summary

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Gene symbol
HDAC9
Gene description
histone deacetylase 9
See related
EnsemblRapid:ENSOVIG00010018266
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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See HDAC9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
40
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018335310.1 (293171..1294418, complement)

NW_018335310.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 D4 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2 D4 pseudogene Neighboring gene uncharacterized LOC110142326 Neighboring gene 40S ribosomal protein S27-like Neighboring gene ribose-phosphate pyrophosphokinase 1-like Neighboring gene mesoderm-specific transcript homolog protein-like Neighboring gene sorting nexin 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018335310 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018335310.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    293171..1294418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020901438.1 → XP_020757097.1  histone deacetylase 9 isoform X1

    UniProtKB/TrEMBL
    A0A6J0Y6Z0
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:656 → 1033
    HDAC_classIIa; Histone deacetylases, class IIa

  2. XM_020901448.1 → XP_020757107.1  histone deacetylase 9 isoform X7

    UniProtKB/TrEMBL
    A0A6J0Y6Z9
    Conserved Domains (2) summary
    cd10163
    Location:60 → 146
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:609 → 986
    HDAC_classIIa; Histone deacetylases, class IIa

  3. XM_020901440.1 → XP_020757099.1  histone deacetylase 9 isoform X3

    UniProtKB/TrEMBL
    A0A6J0Y6A6
    Conserved Domains (2) summary
    cd10163
    Location:60 → 146
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:653 → 1030
    HDAC_classIIa; Histone deacetylases, class IIa

  4. XM_020901447.1 → XP_020757106.1  histone deacetylase 9 isoform X6

    UniProtKB/TrEMBL
    A0A6J0Y769
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:612 → 989
    HDAC_classIIa; Histone deacetylases, class IIa

  5. XM_020901437.1 → XP_020757096.1  histone deacetylase 9 isoform X1

    UniProtKB/TrEMBL
    A0A6J0Y6Z0
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:656 → 1033
    HDAC_classIIa; Histone deacetylases, class IIa

  6. XM_020901445.1 → XP_020757104.1  histone deacetylase 9 isoform X5

    UniProtKB/TrEMBL
    A0A6J0Y6B1
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:656 → 997
    HDAC_classIIa; Histone deacetylases, class IIa

  7. XM_020901439.1 → XP_020757098.1  histone deacetylase 9 isoform X2

    UniProtKB/TrEMBL
    A0A6J0Y688
    Conserved Domains (2) summary
    cd10163
    Location:57 → 146
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:653 → 1030
    HDAC_classIIa; Histone deacetylases, class IIa

  8. XM_020901441.1 → XP_020757100.1  histone deacetylase 9 isoform X4

    UniProtKB/TrEMBL
    A0A6J0Y6B2
    Related
    ENSOVIP00010025968.1, ENSOVIT00010029337.1
    Conserved Domains (2) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:634 → 1011
    HDAC_classIIa; Histone deacetylases, class IIa

  9. XM_020901444.1 → XP_020757103.1  histone deacetylase 9 isoform X4

    UniProtKB/TrEMBL
    A0A6J0Y6B2
    Conserved Domains (2) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:634 → 1011
    HDAC_classIIa; Histone deacetylases, class IIa

  10. XM_020901443.1 → XP_020757102.1  histone deacetylase 9 isoform X4

    UniProtKB/TrEMBL
    A0A6J0Y6B2
    Conserved Domains (2) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:634 → 1011
    HDAC_classIIa; Histone deacetylases, class IIa

  11. XM_020901442.1 → XP_020757101.1  histone deacetylase 9 isoform X4

    UniProtKB/TrEMBL
    A0A6J0Y6B2
    Related
    ENSOVIP00010026123.1, ENSOVIT00010029513.1
    Conserved Domains (2) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:634 → 1011
    HDAC_classIIa; Histone deacetylases, class IIa

  12. XM_020901449.1 → XP_020757108.1  histone deacetylase 9 isoform X8

    UniProtKB/TrEMBL
    A0A6J0Y698
    Conserved Domains (2) summary
    cd10163
    Location:7 → 96
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cd11681
    Location:603 → 980
    HDAC_classIIa; Histone deacetylases, class IIa

  13. XM_020901451.1 → XP_020757110.1  histone deacetylase 9 isoform X10

    UniProtKB/TrEMBL
    A0A6J0Y6C2
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:656 → 956
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  14. XM_020901450.1 → XP_020757109.1  histone deacetylase 9 isoform X9

    UniProtKB/TrEMBL
    A0A6J0Y6B5
    Related
    ENSOVIP00010026382.1, ENSOVIT00010029792.1
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:656 → 956
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  15. XM_020901452.1 → XP_020757111.1  histone deacetylase 9 isoform X11

    UniProtKB/TrEMBL
    A0A6J0Y776
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:656 → 845
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  16. XM_020901453.1 → XP_020757112.1  histone deacetylase 9 isoform X12

    UniProtKB/TrEMBL
    A0A6J0Y705
    Conserved Domains (2) summary
    cd10163
    Location:60 → 149
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase
    cl17011
    Location:656 → 703
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  17. XM_020901460.1 → XP_020757119.1  histone deacetylase 9 isoform X16

    UniProtKB/TrEMBL
    A0A6J0Y6C6
    Conserved Domains (1) summary
    cl25407
    Location:38 → 124
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  18. XM_020901455.1 → XP_020757114.1  histone deacetylase 9 isoform X14

    UniProtKB/TrEMBL
    A0A6J0Y6C5
    Conserved Domains (1) summary
    cl25407
    Location:38 → 124
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  19. XM_020901458.1 → XP_020757117.1  histone deacetylase 9 isoform X15

    UniProtKB/TrEMBL
    A0A6J0Y781
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  20. XM_020901454.1 → XP_020757113.1  histone deacetylase 9 isoform X13

    UniProtKB/TrEMBL
    A0A6J0Y6A0
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

  21. XM_020901461.1 → XP_020757120.1  histone deacetylase 9 isoform X16

    UniProtKB/TrEMBL
    A0A6J0Y6C6
    Conserved Domains (1) summary
    cl25407
    Location:38 → 124
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  22. XM_020901456.1 → XP_020757115.1  histone deacetylase 9 isoform X14

    UniProtKB/TrEMBL
    A0A6J0Y6C5
    Conserved Domains (1) summary
    cl25407
    Location:38 → 124
    ClassIIa_HDAC_Gln-rich-N; Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9)

  23. XM_020901457.1 → XP_020757116.1  histone deacetylase 9 isoform X15

    UniProtKB/TrEMBL
    A0A6J0Y781
    Conserved Domains (1) summary
    cd10163
    Location:38 → 127
    ClassIIa_HDAC9_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC9, a Class IIa histone deacetylase

RNA

  1. XR_002315284.1 RNA Sequence

  2. XR_002315285.1 RNA Sequence

  3. XR_002315290.1 RNA Sequence

  4. XR_002315286.1 RNA Sequence

  5. XR_002315287.1 RNA Sequence

  6. XR_002315288.1 RNA Sequence

  7. XR_002315289.1 RNA Sequence

Nucleotide Protein
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