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SYBU syntabulin [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110126609, updated on 15-Mar-2024

Summary

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Gene symbol
SYBU
Gene description
syntabulin
See related
EnsemblRapid:ENSOVIG00010018063
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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See SYBU in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018339509.1 (1147634..1227336, complement)

NW_018339509.1Genomic Context describing neighboring genes Neighboring gene PKHD1 like 1 Neighboring gene estrogen receptor binding site associated antigen 9 Neighboring gene platelet-activating factor acetylhydrolase IB subunit gamma pseudogene Neighboring gene protein SMG5 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018339509 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axonal transport of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic microtubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntabulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018339509.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    1147634..1227336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020876374.1 → XP_020732033.1  syntabulin isoform X6

    UniProtKB/TrEMBL
    A0A6J0W2Y0
    Conserved Domains (1) summary
    pfam15290
    Location:100 → 290
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  2. XM_020876371.1 → XP_020732030.1  syntabulin isoform X3

    UniProtKB/TrEMBL
    A0A6J0W6S7
    Conserved Domains (1) summary
    pfam15290
    Location:235 → 425
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  3. XM_020876369.1 → XP_020732028.1  syntabulin isoform X1

    UniProtKB/TrEMBL
    A0A6J0W2X5
    Conserved Domains (1) summary
    pfam15290
    Location:255 → 445
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  4. XM_020876372.1 → XP_020732031.1  syntabulin isoform X4

    UniProtKB/TrEMBL
    A0A6J0W424
    Related
    ENSOVIP00010025633.1, ENSOVIT00010028946.1
    Conserved Domains (1) summary
    pfam15290
    Location:234 → 424
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  5. XM_020876370.1 → XP_020732029.1  syntabulin isoform X2

    UniProtKB/TrEMBL
    A0A6J0W843
    Conserved Domains (1) summary
    pfam15290
    Location:254 → 444
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp

  6. XM_020876373.1 → XP_020732032.1  syntabulin isoform X5

    UniProtKB/TrEMBL
    A0A6J0W2Z1
    Conserved Domains (1) summary
    pfam15290
    Location:102 → 292
    Syntaphilin; Golgi-localized syntaxin-1-binding clamp
Nucleotide Protein
Heading Accession and Version

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