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ltn1 listerin E3 ubiquitin protein ligase 1 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109988386, updated on 1-Aug-2024

Summary

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Gene symbol
ltn1
Gene description
listerin E3 ubiquitin protein ligase 1
See related
Ensembl:ENSLBEG00000012355
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
human zebrafish all
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Genomic context

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See ltn1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
32
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 14 NC_089208.1 (19253632..19267951, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114552.1 (81948..96227)

Chromosome 14 - NC_089208.1Genomic Context describing neighboring genes Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cell adhesion molecule 2a Neighboring gene uncharacterized LOC136182387 Neighboring gene transmembrane protein 135 Neighboring gene hephaestin-like 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ribosomal large subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rescue of stalled ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome-associated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RQC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase listerin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089208.1 Reference fLabBer1.1

    Range
    19253632..19267951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020639856.3 → XP_020495512.2  E3 ubiquitin-protein ligase listerin

    UniProtKB/TrEMBL
    A0A3Q3FAJ6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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