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irf2b interferon regulatory factor 2b [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109984280, updated on 26-Jun-2024

Summary

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Gene symbol
irf2b
Gene description
interferon regulatory factor 2b
See related
Ensembl:ENSLBEG00000015759
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Also known as
irf2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 9 NC_089203.1 (8989652..9008316, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114482.1 (1119219..1137957)

Chromosome 9 - NC_089203.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136180003 Neighboring gene uncharacterized LOC114920325 Neighboring gene caspase-3 Neighboring gene centromere protein U

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089203.1 Reference fLabBer1.1

    Range
    8989652..9008316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020634370.3 → XP_020490026.1  interferon regulatory factor 2 isoform X1

    Conserved Domains (1) summary
    pfam00605
    Location:18 → 123
    IRF; Interferon regulatory factor transcription factor

  2. XM_020634371.3 → XP_020490027.1  interferon regulatory factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3FLM5
    Conserved Domains (1) summary
    pfam00605
    Location:7 → 112
    IRF; Interferon regulatory factor transcription factor

  3. XM_020634372.3 → XP_020490028.1  interferon regulatory factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q3FLM5
    Related
    ENSLBEP00000020557.1
    Conserved Domains (1) summary
    pfam00605
    Location:7 → 112
    IRF; Interferon regulatory factor transcription factor
Nucleotide Protein
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