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ctnnb1 catenin (cadherin-associated protein), beta 1 [ Rhincodon typus (whale shark) ]

Gene ID: 109912476, updated on 14-Mar-2024

Summary

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Gene symbol
ctnnb1
Gene description
catenin (cadherin-associated protein), beta 1
See related
EnsemblRapid:ENSRTYG00015014747
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 2 NC_063333.1 (141841315..141878587, complement)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018031511.1 (177870..215283, complement)

Chromosome 2 - NC_063333.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125486351 Neighboring gene trafficking protein, kinesin binding 1a Neighboring gene unc-51 like kinase 4 Neighboring gene uncharacterized LOC125485107 Neighboring gene kinesin-like protein KIF15-A Neighboring gene kinesin-like protein KIF15-A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
catenin beta-1
Names
catenin beta 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063333.1 Reference sRhiTyp1.1

    Range
    141841315..141878587 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020511913.2 → XP_020367502.1  catenin beta-1

    Conserved Domains (4) summary
    smart00185
    Location:350 → 390
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:583 → 622
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:402 → 427
    ARM; armadillo repeat [structural motif]
    cl25709
    Location:71 → 431
    Arm_3; Atypical Arm repeat

  2. XM_048606290.1 → XP_048462247.1  catenin beta-1

    Related
    ENSRTYP00015023004.1, ENSRTYT00015025553.1

  3. XM_048606295.1 → XP_048462252.1  catenin beta-1

    Related
    ENSRTYP00015023009.1, ENSRTYT00015025559.1
Nucleotide Protein
Heading Accession and Version

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