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chchd1 coiled-coil-helix-coiled-coil-helix domain containing 1 [ Oncorhynchus kisutch (coho salmon) ]

Gene ID: 109889914, updated on 14-Mar-2024

Summary

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Gene symbol
chchd1
Gene description
coiled-coil-helix-coiled-coil-helix domain containing 1
See related
Ensembl:ENSOKIG00005029456
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus kisutch
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
3
Annotation release Status Assembly LG Location
101 current Okis_V2 (GCF_002021735.2) LG4 NC_034177.2 (68416860..68424075)
100 previous assembly Okis_V1 (GCF_002021735.1) LG4 NC_034177.1 (66418854..66426050)

Linkage Group LG4 - NC_034177.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109889913 Neighboring gene rap1 GTPase-GDP dissociation stimulator 1 Neighboring gene neurotrypsin-like Neighboring gene zinc finger, SWIM-type containing 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication. Kim JH, et al. Mar Genomics, 2016 Feb. PMID 26614614

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil-helix-coiled-coil-helix domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus kisutch Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Okis_V2 Primary Assembly

Genomic

  1. NC_034177.2 Reference Okis_V2 Primary Assembly

    Range
    68416860..68424075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020481732.2 → XP_020337321.1  coiled-coil-helix-coiled-coil-helix domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8C7I8A7
    Related
    ENSOKIP00005068595.1, ENSOKIT00005072956.1
    Conserved Domains (1) summary
    pfam06747
    Location:50 → 84
    CHCH; CHCH domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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