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Nectin3 nectin cell adhesion molecule 3 [ Castor canadensis (American beaver) ]

Gene ID: 109700667, updated on 14-Mar-2024

Summary

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Gene symbol
Nectin3
Gene description
nectin cell adhesion molecule 3
See related
Ensembl:ENSCCNG00000030008
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017872921.1 (87031..206705)

NW_017872921.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017872921.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in symbiont entry into host cell IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in apical junction complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nectin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017872921.1 Reference C.can genome v1.0

    Range
    87031..206705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020185944.1 → XP_020041533.1  nectin-3 isoform X1

    UniProtKB/TrEMBL
    A0A8B7WC91
    Related
    ENSCCNP00000031505.1, ENSCCNT00000039619.1
    Conserved Domains (4) summary
    cd05887
    Location:72 → 167
    Ig1_Nectin-3_like; First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins
    cd12087
    Location:403 → 432
    TM_EGFR-like; Transmembrane domain of the Epidermal Growth Factor Receptor family of Protein Tyrosine Kinases
    smart00410
    Location:287 → 348
    IG_like; Immunoglobulin like
    cl11960
    Location:170 → 265
    Ig; Immunoglobulin domain

  2. XM_020185946.1 → XP_020041535.1  nectin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8B7WCA8, A0A8C0ZZJ5
    Related
    ENSCCNP00000031503.1, ENSCCNT00000039617.1
    Conserved Domains (3) summary
    cd05887
    Location:25 → 120
    Ig1_Nectin-3_like; First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins
    smart00410
    Location:240 → 301
    IG_like; Immunoglobulin like
    cl11960
    Location:123 → 218
    Ig; Immunoglobulin domain

  3. XM_020185945.1 → XP_020041534.1  nectin-3 isoform X2

    UniProtKB/TrEMBL
    A0A8B7WCA8, A0A8C0ZZJ5
    Conserved Domains (3) summary
    cd05887
    Location:25 → 120
    Ig1_Nectin-3_like; First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins
    smart00410
    Location:240 → 301
    IG_like; Immunoglobulin like
    cl11960
    Location:123 → 218
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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