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Btaf1 B-TFIID TATA-box binding protein associated factor 1 [ Castor canadensis (American beaver) ]

Gene ID: 109682158, updated on 14-Mar-2024

Summary

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Gene symbol
Btaf1
Gene description
B-TFIID TATA-box binding protein associated factor 1
See related
Ensembl:ENSCCNG00000028014
Gene type
protein coding
RefSeq status
MODEL
Organism
Castor canadensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Castorimorpha; Castoridae; Castor
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
38
Annotation release Status Assembly Chr Location
100 current C.can genome v1.0 (GCF_001984765.1) Unplaced Scaffold NW_017869508.1 (62507..155617)

NW_017869508.1Genomic Context describing neighboring genes Neighboring gene cytoplasmic polyadenylation element-binding protein 3 Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene cytoplasmic polyadenylation element-binding protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017869508.1 Unplaced Scaffold Reference C.can genome v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA-binding protein-associated factor 172

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Castor canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference C.can genome v1.0

Genomic

  1. NW_017869508.1 Reference C.can genome v1.0

    Range
    62507..155617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020157276.1 → XP_020012865.1  TATA-binding protein-associated factor 172 isoform X1

    UniProtKB/TrEMBL
    A0A250Y891
    Related
    ENSCCNP00000029188.1, ENSCCNT00000036811.1
    Conserved Domains (3) summary
    COG0553
    Location:1229 → 1801
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    sd00044
    Location:352 → 377
    HEAT; HEAT repeat [structural motif]
    pfam12054
    Location:594 → 1051
    DUF3535; Domain of unknown function (DUF3535)

  2. XM_020157284.1 → XP_020012873.1  TATA-binding protein-associated factor 172 isoform X2

    UniProtKB/TrEMBL
    A0A8C0XNH7
    Related
    ENSCCNP00000029194.1, ENSCCNT00000036818.1
    Conserved Domains (3) summary
    COG0553
    Location:1161 → 1733
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    sd00044
    Location:352 → 377
    HEAT; HEAT repeat [structural motif]
    pfam12054
    Location:594 → 983
    DUF3535; Domain of unknown function (DUF3535)

RNA

  1. XR_002211976.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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