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vasnb vasorin b [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109638715, updated on 14-Mar-2024

Summary

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Gene symbol
vasnb
Gene description
vasorin b
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Also known as
vasn
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859684.1 (789677..812857, complement)

NW_017859684.1Genomic Context describing neighboring genes Neighboring gene coronin-7-like Neighboring gene heme oxygenase 2b Neighboring gene DnaJ heat shock protein family (Hsp40) member A3a Neighboring gene transcription factor AP-4 (activating enhancer binding protein 4) Neighboring gene sarcalumenin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859684.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vasorin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859684.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    789677..812857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020101819.1 → XP_019957378.1  vasorin

    Conserved Domains (5) summary
    TIGR00864
    Location:279 → 358
    PCC; polycystin cation channel protein
    COG4886
    Location:87 → 299
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:64 → 87
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00008
    Location:420 → 451
    EGF; EGF-like domain
    cl21522
    Location:476 → 544
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

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