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lrba LPS responsive beige-like anchor protein [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109638300, updated on 14-Mar-2024

Summary

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Gene symbol
lrba
Gene description
LPS responsive beige-like anchor protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
56
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859681.1 (983843..1158997)

NW_017859681.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109638304 Neighboring gene SH3 domain containing 19 Neighboring gene ribosomal protein S3A Neighboring gene mab-21-like 2 Neighboring gene doublecortin-like kinase 2a Neighboring gene nuclear receptor subfamily 3, group C, member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859681.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lipopolysaccharide-responsive and beige-like anchor protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859681.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    983843..1158997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020101206.1 → XP_019956765.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X1

    Conserved Domains (9) summary
    sd00039
    Location:2673 → 2711
    7WD40; WD40 repeat [structural motif]
    pfam02138
    Location:2287 → 2563
    Beach; Beige/BEACH domain
    pfam06469
    Location:1966 → 2132
    DUF1088; Domain of Unknown Function (DUF1088)
    pfam14844
    Location:2158 → 2255
    PH_BEACH; PH domain associated with Beige/BEACH
    pfam15787
    Location:436 → 707
    DUF4704; Domain of unknown function (DUF4704)
    cl00232
    Location:1801 → 1878
    Ribosomal_L19e; Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. ...
    cl22861
    Location:219 → 366
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl25539
    Location:2681 → 2920
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl25758
    Location:1015 → 1368
    DUF4775; Domain of unknown function (DUF4775)

  2. XM_020101207.1 → XP_019956766.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X2

    Conserved Domains (9) summary
    sd00039
    Location:2672 → 2710
    7WD40; WD40 repeat [structural motif]
    pfam02138
    Location:2286 → 2562
    Beach; Beige/BEACH domain
    pfam06469
    Location:1965 → 2131
    DUF1088; Domain of Unknown Function (DUF1088)
    pfam14844
    Location:2157 → 2254
    PH_BEACH; PH domain associated with Beige/BEACH
    pfam15787
    Location:436 → 707
    DUF4704; Domain of unknown function (DUF4704)
    cl00232
    Location:1800 → 1877
    Ribosomal_L19e; Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. ...
    cl22861
    Location:219 → 366
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl25539
    Location:2680 → 2919
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl25758
    Location:1015 → 1368
    DUF4775; Domain of unknown function (DUF4775)

  3. XM_020101208.1 → XP_019956767.1  lipopolysaccharide-responsive and beige-like anchor protein isoform X3

    Conserved Domains (9) summary
    sd00039
    Location:2673 → 2711
    7WD40; WD40 repeat [structural motif]
    pfam02138
    Location:2287 → 2563
    Beach; Beige/BEACH domain
    pfam06469
    Location:1966 → 2132
    DUF1088; Domain of Unknown Function (DUF1088)
    pfam14844
    Location:2158 → 2255
    PH_BEACH; PH domain associated with Beige/BEACH
    pfam15787
    Location:436 → 707
    DUF4704; Domain of unknown function (DUF4704)
    cl00232
    Location:1801 → 1878
    Ribosomal_L19e; Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. ...
    cl22861
    Location:219 → 366
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl25539
    Location:2681 → 2919
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl25758
    Location:1015 → 1368
    DUF4775; Domain of unknown function (DUF4775)
Nucleotide Protein
Heading Accession and Version

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