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rchy1 ring finger and CHY zinc finger domain containing 1 [ Paralichthys olivaceus (Japanese flounder) ]

Gene ID: 109633589, updated on 14-Mar-2024

Summary

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Gene symbol
rchy1
Gene description
ring finger and CHY zinc finger domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Paralichthys olivaceus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Paralichthyidae; Paralichthys
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Flounder_ref_guided_V1.0 (GCF_001970005.1) Unplaced Scaffold NW_017859662.1 (8091390..8095485)

NW_017859662.1Genomic Context describing neighboring genes Neighboring gene nucleolysin TIA-1-like Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene galactose-specific cell agglutination protein gsf2-like Neighboring gene low-density lipoprotein receptor related-protein 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017859662.1 Unplaced Scaffold Reference Flounder_ref_guided_V1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RING finger and CHY zinc finger domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Paralichthys olivaceus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Flounder_ref_guided_V1.0 Primary Assembly

Genomic

  1. NW_017859662.1 Reference Flounder_ref_guided_V1.0 Primary Assembly

    Range
    8091390..8095485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020093581.1 → XP_019949140.1  RING finger and CHY zinc finger domain-containing protein 1

    Conserved Domains (3) summary
    pfam05495
    Location:7 → 78
    zf-CHY; CHY zinc finger
    pfam14599
    Location:179 → 237
    zinc_ribbon_6; Zinc-ribbon
    cd16464
    Location:131 → 175
    RING-H2_Pirh2; RING finger, H2 subclass, found in p53-induced RING-H2 protein (Pirh2) and similar proteins
Nucleotide Protein
Heading Accession and Version

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