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SPOPL speckle type BTB/POZ protein like [ Bos indicus (zebu cattle) ]

Gene ID: 109568103, updated on 14-Mar-2024

Summary

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Gene symbol
SPOPL
Gene description
speckle type BTB/POZ protein like
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos indicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Bos_indicus_1.0 (GCF_000247795.1) 2 NC_032651.1 (61339821..61392755, complement)

Chromosome 2 - NC_032651.1Genomic Context describing neighboring genes Neighboring gene breast cancer metastasis-suppressor 1-like protein Neighboring gene neurexophilin 2 Neighboring gene transmembrane protein 230-like Neighboring gene histone H3-like centromeric protein A pseudogene Neighboring gene histamine N-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032651.1 Chromosome 2 Reference Bos_indicus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
speckle-type POZ protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bos indicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bos_indicus_1.0 Primary Assembly

Genomic

  1. NC_032651.1 Reference Bos_indicus_1.0 Primary Assembly

    Range
    61339821..61392755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019973335.1 → XP_019828894.1  speckle-type POZ protein-like isoform X2

    UniProtKB/TrEMBL
    A0A6P5CUP2
    Conserved Domains (3) summary
    cd18343
    Location:200 → 322
    BTB_POZ_SPOPL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein-like (SPOPL)
    cl02446
    Location:49 → 187
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
    cl28903
    Location:318 → 395
    BACK; BACK (BTB and C-terminal Kelch) domain

  2. XM_019973330.1 → XP_019828889.1  speckle-type POZ protein-like isoform X1

    UniProtKB/TrEMBL
    A0A6P5CUN7
    Conserved Domains (3) summary
    cd18343
    Location:200 → 322
    BTB_POZ_SPOPL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein-like (SPOPL)
    cd18519
    Location:318 → 413
    BACK_SPOPL; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein-like (SPOPL)
    cl02446
    Location:49 → 187
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

  3. XM_019973346.1 → XP_019828905.1  speckle-type POZ protein-like isoform X3

    UniProtKB/TrEMBL
    A0A6P5CTA3
    Conserved Domains (3) summary
    cd18343
    Location:179 → 301
    BTB_POZ_SPOPL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein-like (SPOPL)
    cd18519
    Location:297 → 392
    BACK_SPOPL; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein-like (SPOPL)
    cl02446
    Location:28 → 166
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

  4. XM_019973354.1 → XP_019828913.1  speckle-type POZ protein-like isoform X4

    UniProtKB/TrEMBL
    A0A6P5CTL0
    Conserved Domains (2) summary
    cd18343
    Location:104 → 226
    BTB_POZ_SPOPL; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in speckle-type POZ protein-like (SPOPL)
    cd18519
    Location:222 → 317
    BACK_SPOPL; BACK (BTB and C-terminal Kelch) domain found in speckle-type POZ protein-like (SPOPL)
Nucleotide Protein
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