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sytl4 synaptotagmin-like 4 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109524261, updated on 12-Sep-2024

Summary

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Gene symbol
sytl4
Gene description
synaptotagmin-like 4
See related
Ensembl:ENSHCOG00000005074
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805744.1 (4486546..4507698, complement)

NW_017805744.1Genomic Context describing neighboring genes Neighboring gene MID1 interacting protein 1, like Neighboring gene tetraspanin 6 Neighboring gene sushi-repeat containing protein X-linked 2 Neighboring gene uncharacterized LOC109524338 Neighboring gene tRNA methyltransferase 12 homolog Neighboring gene zinc finger DHHC-type palmitoyltransferase 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805744.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables neurexin family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in exocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptotagmin-like protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805744.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    4486546..4507698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019883992.1 → XP_019739551.1  synaptotagmin-like protein 4 isoform X9

    Conserved Domains (3) summary
    cd04020
    Location:977 → 1145
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:838 → 961
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  2. XM_019883983.1 → XP_019739542.1  synaptotagmin-like protein 4 isoform X1

    Conserved Domains (3) summary
    cd04020
    Location:1103 → 1271
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:964 → 1087
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  3. XM_019883984.1 → XP_019739543.1  synaptotagmin-like protein 4 isoform X1

    Conserved Domains (3) summary
    cd04020
    Location:1103 → 1271
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:964 → 1087
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  4. XM_019883985.1 → XP_019739544.1  synaptotagmin-like protein 4 isoform X2

    Conserved Domains (3) summary
    cd04020
    Location:1100 → 1268
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:961 → 1084
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  5. XM_019883986.1 → XP_019739545.1  synaptotagmin-like protein 4 isoform X3

    Conserved Domains (3) summary
    cd04020
    Location:1045 → 1213
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:906 → 1029
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  6. XM_019883987.1 → XP_019739546.1  synaptotagmin-like protein 4 isoform X4

    Conserved Domains (4) summary
    cd04020
    Location:1040 → 1208
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    pfam17118
    Location:372 → 482
    DUF5105; Domain of unknown function (DUF5105)
    cl14603
    Location:901 → 1024
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  7. XM_019883988.1 → XP_019739547.1  synaptotagmin-like protein 4 isoform X5

    Conserved Domains (3) summary
    cd04020
    Location:1040 → 1208
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:901 → 1024
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  8. XM_019883998.1 → XP_019739557.1  synaptotagmin-like protein 4 isoform X14

    Conserved Domains (3) summary
    cd04020
    Location:852 → 1020
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:713 → 836
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  9. XM_019883993.1 → XP_019739552.1  synaptotagmin-like protein 4 isoform X10

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Conserved Domains (3) summary
    cd04020
    Location:915 → 1083
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:776 → 899
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  10. XM_019883990.1 → XP_019739549.1  synaptotagmin-like protein 4 isoform X7

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Conserved Domains (3) summary
    cd04020
    Location:978 → 1146
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:839 → 962
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  11. XM_019883989.1 → XP_019739548.1  synaptotagmin-like protein 4 isoform X6

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Conserved Domains (3) summary
    cd04020
    Location:982 → 1150
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:843 → 966
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  12. XM_019883997.1 → XP_019739556.1  synaptotagmin-like protein 4 isoform X13

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Conserved Domains (3) summary
    cd04020
    Location:852 → 1020
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:713 → 836
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  13. XM_019883991.1 → XP_019739550.1  synaptotagmin-like protein 4 isoform X8

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Conserved Domains (3) summary
    cd04020
    Location:977 → 1145
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:838 → 961
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  14. XM_019883995.1 → XP_019739554.1  synaptotagmin-like protein 4 isoform X11

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Conserved Domains (3) summary
    cd04020
    Location:856 → 1024
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:717 → 840
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  15. XM_019883999.1 → XP_019739558.1  synaptotagmin-like protein 4 isoform X15

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Related
    ENSHCOP00000019622.1, ENSHCOT00000008288.1
    Conserved Domains (3) summary
    cd04020
    Location:851 → 1019
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:712 → 835
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily

  16. XM_019883996.1 → XP_019739555.1  synaptotagmin-like protein 4 isoform X12

    UniProtKB/TrEMBL
    A0A3Q2Z119
    Conserved Domains (3) summary
    cd04020
    Location:852 → 1020
    C2B_SLP_1-2-3-4; C2 domain second repeat present in Synaptotagmin-like proteins 1-4
    cl14603
    Location:713 → 836
    C2; C2 domain
    cl22851
    Location:13 → 124
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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