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hmcn1 hemicentin 1 [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109519078, updated on 14-Mar-2024

Summary

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Gene symbol
hmcn1
Gene description
hemicentin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
109
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805467.1 (4145598..4237247, complement)

NW_017805467.1Genomic Context describing neighboring genes Neighboring gene phospholipase A2, group IVAb (cytosolic, calcium-dependent) Neighboring gene actin related protein 2/3 complex, subunit 5B Neighboring gene cAMP-specific 3',5'-cyclic phosphodiesterase 4B-like Neighboring gene phosphodiesterase 4B, cAMP-specific a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805467.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hemicentin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805467.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    4145598..4237247 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019875396.1 → XP_019730955.1  hemicentin-1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2YR82
    Conserved Domains (13) summary
    smart00179
    Location:5298 → 5337
    EGF_CA; Calcium-binding EGF-like domain
    smart00209
    Location:4630 → 4682
    TSP1; Thrombospondin type 1 repeats
    smart00409
    Location:523 → 602
    IG; Immunoglobulin
    smart00410
    Location:3703 → 3784
    IG_like; Immunoglobulin like
    cd00054
    Location:5175 → 5208
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00198
    Location:38 → 194
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam07679
    Location:787 → 877
    I-set; Immunoglobulin I-set domain
    pfam07474
    Location:4854 → 5035
    G2F; G2F domain
    pfam07645
    Location:5255 → 5296
    EGF_CA; Calcium-binding EGF domain
    pfam13927
    Location:3972 → 4046
    Ig_3; Immunoglobulin domain
    cd00096
    Location:3153 → 3222
    Ig; Immunoglobulin domain
    cl11960
    Location:3228 → 3322
    Ig; Immunoglobulin domain
    cl28434
    Location:4348 → 4419
    I-set; Immunoglobulin I-set domain

  2. XM_019875395.1 → XP_019730954.1  hemicentin-1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q2YR82
    Conserved Domains (13) summary
    smart00179
    Location:5418 → 5457
    EGF_CA; Calcium-binding EGF-like domain
    smart00209
    Location:4630 → 4682
    TSP1; Thrombospondin type 1 repeats
    smart00409
    Location:1445 → 1527
    IG; Immunoglobulin
    smart00410
    Location:3703 → 3784
    IG_like; Immunoglobulin like
    cd00054
    Location:5175 → 5208
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00198
    Location:38 → 194
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    pfam07679
    Location:787 → 877
    I-set; Immunoglobulin I-set domain
    pfam07474
    Location:4854 → 5035
    G2F; G2F domain
    pfam07645
    Location:5255 → 5296
    EGF_CA; Calcium-binding EGF domain
    pfam13927
    Location:3972 → 4046
    Ig_3; Immunoglobulin domain
    cd00096
    Location:3153 → 3222
    Ig; Immunoglobulin domain
    cl11960
    Location:3228 → 3322
    Ig; Immunoglobulin domain
    cl28434
    Location:4348 → 4419
    I-set; Immunoglobulin I-set domain

  3. XM_019875397.1 → XP_019730956.1  hemicentin-1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q2YR82
    Conserved Domains (12) summary
    smart00179
    Location:4532 → 4571
    EGF_CA; Calcium-binding EGF-like domain
    smart00209
    Location:3744 → 3796
    TSP1; Thrombospondin type 1 repeats
    smart00409
    Location:2817 → 2898
    IG; Immunoglobulin
    smart00410
    Location:559 → 641
    IG_like; Immunoglobulin like
    cd00054
    Location:4289 → 4322
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam07679
    Location:3177 → 3263
    I-set; Immunoglobulin I-set domain
    pfam07474
    Location:3968 → 4149
    G2F; G2F domain
    pfam07645
    Location:4369 → 4410
    EGF_CA; Calcium-binding EGF domain
    pfam13927
    Location:3086 → 3160
    Ig_3; Immunoglobulin domain
    cd00096
    Location:2267 → 2336
    Ig; Immunoglobulin domain
    cl11960
    Location:2342 → 2436
    Ig; Immunoglobulin domain
    cl28434
    Location:3462 → 3533
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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